Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0727
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SY21 Cluster: Chromosome undetermined SCAF12233, whol...    34   4.3  
UniRef50_Q4XMF5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_A1VZ17 Cluster: Di-/tripeptide transporter; n=6; Campyl...    33   9.9  

>UniRef50_Q4SY21 Cluster: Chromosome undetermined SCAF12233, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF12233,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 301

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 89  YELLNFKLIWCVLLCRVCYFFCFFFKQLVKLFRLKFCVVKFLP 217
           Y  + F  I CV +  +CY FCFF  Q + L + ++C   F+P
Sbjct: 56  YNSVGFFFIICVSIILLCYLFCFFSSQFLVL-KCEYC-KSFVP 96


>UniRef50_Q4XMF5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 108

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 122 VLLCRVCYFFCFFFKQLVKLFRLKFC-VVKFLPDYFYNKML 241
           +  C    FF FFF      F  KFC  + FL  YFYN +L
Sbjct: 13  ISFCYKSVFFFFFFHDFFLHFSSKFCRFIFFLLSYFYNFLL 53


>UniRef50_A1VZ17 Cluster: Di-/tripeptide transporter; n=6;
           Campylobacter jejuni|Rep: Di-/tripeptide transporter -
           Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176)
          Length = 351

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 95  LLNFKLIWCVLLCRVCYF-FCFFFKQLVKLFR--LKFCVVKFLPDYFYNKMLNCN 250
           +L+ KL+  +LLC V YF + F FK L K  +  L   +V F    F+  +LN N
Sbjct: 258 ILSKKLLIVILLCLVIYFIYLFVFKTLNKREKQQLTILIVLFFVATFFGALLNKN 312


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,173,409
Number of Sequences: 1657284
Number of extensions: 9147843
Number of successful extensions: 21199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21176
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)