Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0727
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                    29   5.3  
SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 663 LNVECSNYSNSKHNRALSKVLLSRDTRNRYRLSD 562
           L+  CS++  +  N+AL KV+     +NRYR+ D
Sbjct: 258 LSSTCSSHDVTVGNKALDKVMRQGVMKNRYRIVD 291


>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 728

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 547 TCQFSVTESVSIASITREQYF*ECSIVLRVAV 642
           TCQ+   E++ I  IT   YF  C ++L +A+
Sbjct: 189 TCQYGKEEAIFIFGITTVAYFVPCILLLLLAI 220


>SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 77  SVGRYELLNFKLIWCVLLCRVCYFFCFFFKQLVKLFRLKFCVVKFLPDYFYNKMLNCNCL 256
           S  +Y LL    I+ +++C + YF C   + L K FRL     +F  D   + +   +CL
Sbjct: 168 SASQY-LLTVLDIFVMVICAISYFLC--ARSLYKHFRLVKTTRRFFADQLDDHLSYWDCL 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,058
Number of Sequences: 59808
Number of extensions: 292423
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)