Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0727
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 227 YNKMLNCNCLLTNVDSCSVPLEFSNY 304
           YN + +CN LLT + S +V L+F+ +
Sbjct: 321 YNNITSCNYLLTTLGSYNVMLKFNKF 346


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 80  VGRYELLNFKLIWCVLLCRV-CYFFCFFFKQLVKLFRLKFCVVKFLPDYFYNKMLNCNCL 256
           +GR ++  + + + V  CR     F  F+K    L  + F +++ L  Y  N ML  N L
Sbjct: 623 LGRGQIGIYLVYYAVQKCRFERQSFTLFYKICCTLIFIVFMLMECLNRYLANFMLTYNVL 682

Query: 257 LTNVDS 274
           LT   S
Sbjct: 683 LTPAKS 688


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,155
Number of Sequences: 27780
Number of extensions: 245440
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)