Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0727
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.76 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.1  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   9.3  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 158 FFKQLVKLFRLKFCVVKFLPDYFYNKMLNCNCLLTNVDSCSVPLEFSNYRA*CDSVT 328
           F++   K+  L     + LP Y YN ++     + NVD   +   F+++    D+VT
Sbjct: 434 FYQLYKKVMNLYQQYQQSLPVYQYNDLILPGVTIQNVDVSQLVTLFTDFYVDLDAVT 490


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 278 SNYLHSLIDNYNLTFYCKNNPVKTSQHKI 192
           +NY +S  +NYN   Y  NN  K   + I
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 278 SNYLHSLIDNYNLTFYCKNNPVKTSQHKI 192
           +NY +S  +NYN   Y  NN  K   + I
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 278 SNYLHSLIDNYNLTFYCKNNPVKTSQHKI 192
           +NY +S  +NYN   Y  NN  K   + I
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 278 SNYLHSLIDNYNLTFYCKNNPVKTSQHKI 192
           +NY +S  +NYN   Y  NN  K   + I
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 654 ECSNYSNSKHNRALSKVLL--SRDTRNRYRLSDRKLTSVFS 538
           E ++Y N K  R   +     SRD R R R  +RK+ S  S
Sbjct: 46  EQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLS 86


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 654 ECSNYSNSKHNRALSKVLL--SRDTRNRYRLSDRKLTSVFS 538
           E ++Y N K  R   +     SRD R R R  +RK+ S  S
Sbjct: 46  EQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLS 86


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 686 LXCNWKTTIFKELR*ILTDFK 748
           + CN +    KELR IL D K
Sbjct: 202 MFCNLENVKLKELRIILEDIK 222


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 278 SNYLHSLIDNYNLTFYCKNNPVKTSQ 201
           +NY ++  +NYN   Y KN  +   Q
Sbjct: 331 NNYNNNNYNNYNKKLYYKNYIINIEQ 356


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +2

Query: 194 FCVVKFLPDYFYNKMLNCNCLLTNVDSCS 280
           F  V  +  YF   ++ CNC       C+
Sbjct: 11  FLSVILITSYFVTPVMPCNCKAPETALCA 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,185
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)