Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0727
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02630.1 68418.m00199 expressed protein                             29   2.5  
At3g46750.1 68416.m05075 hypothetical protein                          28   5.8  

>At5g02630.1 68418.m00199 expressed protein
          Length = 428

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 372 LIHVPIKLQHNSALCVTESHYAL 304
           L HV ++LQ N + CV +SHY L
Sbjct: 79  LPHVLLELQQNFSFCVLDSHYIL 101


>At3g46750.1 68416.m05075 hypothetical protein 
          Length = 415

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 431 LLRNYDETKALEIFSTLNNITNVN*YKQNFDQCQLKE 541
           L+ N +E++ L   ST+NN+T++  Y   FD   + E
Sbjct: 368 LVANTNESEFLFYSSTINNLTHLQLYSDAFDSAAVVE 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,978
Number of Sequences: 28952
Number of extensions: 205346
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)