Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0726
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   3.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 576 FSRQLRHDLRSI-N*KEESSCFISNSTSNEC 487
           F R +R + + +   K+E SC I  +  N+C
Sbjct: 62  FKRSIRRNRQYVCKAKDEGSCIIDKTHRNQC 92


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 576 FSRQLRHDLRSI-N*KEESSCFISNSTSNEC 487
           F R +R + + +   K+E SC I  +  N+C
Sbjct: 62  FKRSIRRNRQYVCKAKDEGSCIIDKTHRNQC 92



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 610 LPQTPYGGLTPILPP 566
           LPQ P   L PI PP
Sbjct: 177 LPQVPPLPLPPIFPP 191


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 617 LSASSNALRRFDSDSPASLDMISGPLIKK 531
           L    N L + D DSPA   +++ P  KK
Sbjct: 109 LQLDENKLDKKDDDSPALRALLTRPQAKK 137



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 98  ESSIGSMWTRFPYFTEGHGAMDTTSERRTRR 6
           E+S+      F  + + HG    T  +RTR+
Sbjct: 158 ENSVSEPPANFYPWMKAHGDSSATGNKRTRQ 188


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 502 AVANETGAFFFLINGPE 552
           A+A + G+F  L+ GPE
Sbjct: 70  ALAEQLGSFITLVGGPE 86


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 193 VRGGMRAVEFKVVETDPSPFCIVAPD 270
           +RG  R   +KV E  PSP   V+P+
Sbjct: 101 IRGPKRKT-WKVEEDSPSPTSSVSPE 125


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 98  ESSIGSMWTRFPYFTEGHGAMDTTSERRTRR 6
           E+S+      F  + + HG    T  +RTR+
Sbjct: 158 ENSVSEPPANFYPWMKAHGDSSATGNKRTRQ 188


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 107  VLLAIYSKYT*SRTSWRLTVRSIVTTPSWSA 199
            +LL IYS +  +  SW     ++V  P  +A
Sbjct: 1017 LLLVIYSVFNMNNVSWGTREVTVVPKPDPNA 1047


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 107  VLLAIYSKYT*SRTSWRLTVRSIVTTPSWSA 199
            +LL IYS +  +  SW     ++V  P  +A
Sbjct: 1017 LLLVIYSVFNMNNVSWGTREVTVVPKPDPNA 1047


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 98  ESSIGSMWTRFPYFTEGHGAMDTTSERRTRR 6
           E+S+      F  + + HG    T  +RTR+
Sbjct: 158 ENSVSEPPANFYPWMKAHGDSSATGNKRTRQ 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,725
Number of Sequences: 336
Number of extensions: 3612
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)