Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0726
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 390 e-109
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 148 9e-37
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 136 3e-33
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 133 2e-32
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 132 6e-32
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 128 6e-31
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 127 1e-30
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 126 4e-30
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 121 9e-29
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 120 3e-28
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 116 4e-27
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 115 8e-27
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 111 7e-26
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 105 6e-24
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 105 8e-24
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 97 2e-21
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 97 2e-21
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 95 9e-21
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 93 5e-20
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 86 4e-18
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 42 1e-04
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 36 0.006
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 34 0.017
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 34 0.022
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 32 0.091
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.091
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.12
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.48
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 0.85
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 0.85
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.85
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 0.85
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 1.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.5
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 3.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.4
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 3.4
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 4.5
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 4.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 6.0
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 6.0
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 6.0
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 390 bits (959), Expect = e-109
Identities = 176/230 (76%), Positives = 207/230 (90%)
Frame = +1
Query: 1 NNLRVRLSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRD 180
NNLRVRL D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPYF+EAYRPI +
Sbjct: 110 NNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKG 169
Query: 181 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGC 360
D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGC
Sbjct: 170 DLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGC 229
Query: 361 RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLI 540
R+Q+AQI+E+VELPLRHP LFK+IG+KPPRGILMYGPPGTGKTL+ARAVANETGAFFFLI
Sbjct: 230 RRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLI 289
Query: 541 NGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE 690
NGPEIMSK+AGESESNLRKAFEEA+KNSPAIIFIDE+D+IAPKREKT+GE
Sbjct: 290 NGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGE 339
Score = 124 bits (300), Expect = 9e-30
Identities = 58/131 (44%), Positives = 87/131 (66%)
Frame = +1
Query: 304 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 483
RE E N V ++DIGG + +++E V++P+ + F GV P +G+L +GPPGTG
Sbjct: 485 RETVVEVPN-VRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTG 543
Query: 484 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 663
KTL+A+A+ANE A F + GPE++S GESESN+R F++A +P ++F+DELD+IA
Sbjct: 544 KTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIA 603
Query: 664 PKREKTHGEXG 696
R + G+ G
Sbjct: 604 KARGASAGDSG 614
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 148 bits (358), Expect = 9e-37
Identities = 66/121 (54%), Positives = 90/121 (74%)
Frame = +1
Query: 328 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 507
+AV + IGG + Q+AQI+++VELP ++P LFK + PPRG+L+YGPPGTGKT++ RAV
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAV 333
Query: 508 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG 687
A E A F I+GP ++ K GE+ES LRK FE+A + P+IIFIDE+DA+APKR +
Sbjct: 334 AAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVS 393
Query: 688 E 690
E
Sbjct: 394 E 394
Score = 123 bits (297), Expect = 2e-29
Identities = 57/123 (46%), Positives = 81/123 (65%)
Frame = +1
Query: 304 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 483
RE E+ N V + DIGG + ++KE VE PL H F +GV+PP+G+L+YGPPG
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCS 594
Query: 484 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 663
KT+ A+A+A ETG F + GPE+ K GESE +R+ F++A + SP++IF DE+DA+
Sbjct: 595 KTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALT 654
Query: 664 PKR 672
R
Sbjct: 655 ANR 657
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 136 bits (329), Expect = 3e-33
Identities = 60/129 (46%), Positives = 89/129 (68%)
Frame = +1
Query: 286 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 465
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++ +G+KPP+G+++Y
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 466 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFID 645
G PGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F A+++SP+I+FID
Sbjct: 232 GAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFID 291
Query: 646 ELDAIAPKR 672
E+DAI KR
Sbjct: 292 EIDAIGTKR 300
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 133 bits (322), Expect = 2e-32
Identities = 57/130 (43%), Positives = 87/130 (66%)
Frame = +1
Query: 301 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 480
K E E + + DIGG + ++ E+V +P++HP +++ G+ PPRG+L++GPPG
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGC 219
Query: 481 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAI 660
GKT++A A+ANE G F I+ P I+S ++GESE +R+ FEEA +P ++FIDE+DA+
Sbjct: 220 GKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAV 279
Query: 661 APKREKTHGE 690
PKRE E
Sbjct: 280 TPKRESAQRE 289
Score = 121 bits (291), Expect = 1e-28
Identities = 52/133 (39%), Positives = 87/133 (65%)
Frame = +1
Query: 292 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 471
+P + E + V +++IG + +++ + P++ P L++++G+ P G+L++GP
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 472 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDEL 651
PG GKTL+A+AVANE+ A F I GPE+++K GESE +R+ F A +SP +IF DEL
Sbjct: 535 PGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDEL 594
Query: 652 DAIAPKREKTHGE 690
DA+ P+R+ + E
Sbjct: 595 DAMVPRRDDSLSE 607
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 132 bits (318), Expect = 6e-32
Identities = 56/119 (47%), Positives = 86/119 (72%)
Frame = +1
Query: 340 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 519
Y+ +GG KQ+ +IKE++ELP++HP LF+++G+ P+GIL+YGPPGTGKTL+ARAVA+ T
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHT 203
Query: 520 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEXG 696
F ++G E++ K GE +R+ F A +++P+IIF+DE+D+I R + G G
Sbjct: 204 DCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSG 262
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 128 bits (310), Expect = 6e-31
Identities = 59/113 (52%), Positives = 77/113 (68%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V Y D+GG Q +++E VELPL L++ IG+ PPRG+L+YGPPGTGKT++ +AVAN
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
T A F + G E + K GE +R F A +N+PAIIFIDE+DAIA KR
Sbjct: 191 STAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKR 243
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 127 bits (307), Expect = 1e-30
Identities = 58/113 (51%), Positives = 80/113 (70%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V +DDIGG + +++ ++LPL+ P LF G+KP G+L+YGPPGTGKTL+A+AVA
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVAT 710
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
E F I GPE+++ GESE+N+R FE+A +SP +IF DELD+IAP R
Sbjct: 711 ELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHR 763
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 457 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAII 636
L++G P TGKT VA+ A F I+ E A E+ L + K+ AII
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII 485
Query: 637 FIDELDAIA 663
F+ +LD ++
Sbjct: 486 FVKDLDVLS 494
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 126 bits (303), Expect = 4e-30
Identities = 57/113 (50%), Positives = 76/113 (67%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V Y D+GGC++Q+ +++E+VELPL P F +G+ PP+GI++YGPPGTGKTL ARAVAN
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVAN 235
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
T A F + G E++ K GE +R+ FE A IIF DE+DAI R
Sbjct: 236 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGAR 288
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 121 bits (292), Expect = 9e-29
Identities = 51/113 (45%), Positives = 79/113 (69%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
+ + +GG +Q+ +++E++ELPL++P LF +G+KPP+G+L+YGPPGTGKTL+ARAVA
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAA 188
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
G F + I+ K GES +R+ F A ++ P +IF+DE+DAI +R
Sbjct: 189 SLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRR 241
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 120 bits (288), Expect = 3e-28
Identities = 55/111 (49%), Positives = 75/111 (67%)
Frame = +1
Query: 340 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 519
Y DIGG KQ+ ++ E + LP++ F+ +GVKPP+G LM+GPPGTGKTL+ARA A ++
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243
Query: 520 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
A F + P+++ G+ +R AF A + SPAIIFIDELDAI KR
Sbjct: 244 NATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKR 294
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 116 bits (278), Expect = 4e-27
Identities = 61/144 (42%), Positives = 86/144 (59%), Gaps = 9/144 (6%)
Frame = +1
Query: 280 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGIL 459
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F + + PPRG+L
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 460 MYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEADKNS 624
+GPPGTGKTL+AR +A FFL G + +SK GE+E LR FEEA +
Sbjct: 411 FHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQ 470
Query: 625 PAIIFIDELDAIAP----KREKTH 684
P+IIF DE+D +AP K+E+TH
Sbjct: 471 PSIIFFDEIDGLAPIRSSKQEQTH 494
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 550 EIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 654
E++ S L K F EA KN+P+IIFI+ ++
Sbjct: 742 ELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNVE 776
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 115 bits (276), Expect = 8e-27
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 5/120 (4%)
Frame = +1
Query: 328 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 507
+++ ++ +GG + Q+KEMV LPL +P +F+ ++PPRG+L +GPPGTGKTL+ARA+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARAL 320
Query: 508 A-----NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
A F++ G + +SK GE+E LR FEEA P+IIF DE+D +AP R
Sbjct: 321 AAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVR 380
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 111 bits (268), Expect = 7e-26
Identities = 56/122 (45%), Positives = 78/122 (63%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V +DDI G +KE V LP++ P LF G KP GIL+YGPPGTGK+ +A+AVA
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVAT 184
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEX 693
E G+ FF I+ +++SK GESE +R+ FE A + P+IIFIDE+D++ R + E
Sbjct: 185 EAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESES 244
Query: 694 GK 699
+
Sbjct: 245 SR 246
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 105 bits (252), Expect = 6e-24
Identities = 54/120 (45%), Positives = 76/120 (63%)
Frame = +1
Query: 313 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 492
EE A+N V + D+ G + +++E+V+ LR P+ F +G K PRG+L+ GPPGTGKT+
Sbjct: 258 EERAIN-VRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 493 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
+ARAVA E FF ++G + G +R+ F A K +P+IIFIDELDAI KR
Sbjct: 316 LARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKR 375
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 105 bits (251), Expect = 8e-24
Identities = 53/119 (44%), Positives = 73/119 (61%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V +DDI G +KE V P P LF+ + +P RG+L++GPPGTGKT++ARAVA
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVAT 514
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE 690
E+ + FF I+ + SK GESE +R F A K SP+IIF+DE+D++ R E
Sbjct: 515 ESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNE 573
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 97.5 bits (232), Expect = 2e-21
Identities = 46/113 (40%), Positives = 67/113 (59%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
+ + D+ G + +I E V+ L++P ++ +G K PRG ++ GPPGTGKTL+A+A A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
E F ++G E + G S +R F A KN+P IIFIDE+DAI R
Sbjct: 352 EANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKAR 404
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 97.1 bits (231), Expect = 2e-21
Identities = 49/119 (41%), Positives = 72/119 (60%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V + DI G +KE V P P LF+ + +P +G+L++GPPGTGKT++ARAVA
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVAT 434
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE 690
E A FF I+ + SK G+SE +R FE A + + ++IF+DE+D+I R + E
Sbjct: 435 EAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNE 493
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 95.1 bits (226), Expect = 9e-21
Identities = 40/129 (31%), Positives = 77/129 (59%)
Frame = +1
Query: 286 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 465
D P++ + + +++ + DI G ++ +++++E P+++ ++K ++ P GIL++
Sbjct: 587 DFVPLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLF 646
Query: 466 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFID 645
G PG GKT +A A+++ F I GPE++ K G+SE +R F A P ++F D
Sbjct: 647 GYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFD 706
Query: 646 ELDAIAPKR 672
E D++AP+R
Sbjct: 707 EFDSVAPRR 715
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 92.7 bits (220), Expect = 5e-20
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPPRGILMYGPPGTGKTLIARAV 507
V +DDIGG + + Q+ + V PL++P +F G + P+G+L+YGPPG GKT++A+A+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 508 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG 687
A ++ A F ++ + K GES + F A K P IIFIDE+D +R++T
Sbjct: 146 AKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDH 205
Query: 688 E 690
E
Sbjct: 206 E 206
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 86.2 bits (204), Expect = 4e-18
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Frame = +1
Query: 349 IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA 525
IGG + + I + L P + + +G+ +GIL+YGPPGTGKTLIAR + A
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 526 FF-FLINGPEIMSKLAGESESNLRKAFEEADK--------NSPAIIFIDELDAIAPKREK 678
++NGPEI++K G+SE N+RK F +A++ + II DELDAI KR
Sbjct: 331 REPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGS 390
Query: 679 THGEXG 696
+ G+ G
Sbjct: 391 SGGDTG 396
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVA-NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 630
+L+ GP +GKT +A +A F L++ ++ +++ + FE++ K+ +
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAESMVGMNENARVAHVNRVFEDSYKSPLS 647
Query: 631 IIFIDELDAI 660
+I +DE++ I
Sbjct: 648 VIVVDEIERI 657
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/98 (28%), Positives = 47/98 (47%)
Frame = +1
Query: 403 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 582
LR+ + G+ RG L+YGPPG+GKT A+A E ++N E G ++
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAE-----KGLTD 282
Query: 583 SNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEXG 696
L A++ ++++D+ RE++ GE G
Sbjct: 283 DRLNHLLSNVPPK--AVVLLEDVDSAFQGRERS-GEVG 317
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLR 594
R ILM GPP TGKT IA +A G+ F ++ E+ S ++E+ L+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQ 116
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 34.3 bits (75), Expect = 0.017
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES---NLRKAFEEA 612
+G+L G GTGKT +A A+A E G F + G E+ S ++E+ N R+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAIGLR 124
Query: 613 DKNSPAIIFIDELDAIAPKREKTHGEXGK 699
K + + + + + + E G GK
Sbjct: 125 VKETKEVYEGEVTEMVPEEAENPLGGYGK 153
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 33.9 bits (74), Expect = 0.022
Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Frame = +1
Query: 379 IKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA--FFFLINGPE 552
+K++ + L ++ K G + + + GPPG GKT + +++A+ F F + G
Sbjct: 549 LKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFRFSVGGLT 608
Query: 553 IMSKLAGESES-------NLRKAFEEADKNSPAIIFIDELDAIAPKRE 675
++++ G + + +A ++ +P +I IDE+D + +
Sbjct: 609 DVAEIKGHRRTYIGAMPGKIVQALKKVQTENP-LILIDEIDKVGKSHQ 655
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 31.9 bits (69), Expect = 0.091
Identities = 23/98 (23%), Positives = 47/98 (47%)
Frame = -2
Query: 633 NSRRVLVGFLKRLTEV*LRFSRQLRHDLRSIN*KEESSCFISNSTSNECFSGTRRPIHEN 454
NS LV +++ ++ L RQ+ + LR + K S ++ N+ E + + I +
Sbjct: 526 NSLNNLVRYIRSMS---LDVDRQVLYKLRVMGEKCNSVRYLWNTIDTEFSTVSHSLIFQR 582
Query: 453 AAWRLHSNSLEQ*RMTQWQLHHLLNLRQLFATTADVII 340
+RL ++ + +W LH++ ++ QL A + I
Sbjct: 583 IIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCI 620
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.9 bits (69), Expect = 0.091
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 418 LFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLIN 543
+ +A+ V P IL+ G PG GKT + A+A ETG IN
Sbjct: 1552 VLRALQVLKP--ILLEGSPGVGKTSLITALARETGHQLVRIN 1591
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVANETGAFFFLINGPE 552
IL+ GP +GKT + VA +TG F IN E
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHE 929
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 564
+ +L+ GPPG GKT A VA G +N + SK
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSK 448
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 439 KPPRGILMYGPPGTGKTLIARAVAN 513
+P L GP GTGKTL+ +A+A+
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 103 QLNHQLAVCGLV---FHISLKDTERWI 32
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 103 QLNHQLAVCGLV---FHISLKDTERWI 32
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 457 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 564
++ GP G+GKT +A+AV+ + G F I G ++ K
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG--FEYIEGDDLHPK 51
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVANE 516
+L YGPPGTGKT A A +
Sbjct: 59 MLFYGPPGTGKTSTILACARK 79
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVANET 519
I++ G PGTGKT +A VA T
Sbjct: 11 IIICGTPGTGKTTLAEQVAETT 32
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 442 PPRGILMYGPPGTGK-TLIARAVANETGAFFFLINGP 549
PP + + GPPGTGK TLI V + I GP
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGP 109
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 259 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 348
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 457 LMYGPPGTGKTLIARAV 507
L+ GPPGTGKT+ + +V
Sbjct: 411 LIQGPPGTGKTVTSASV 427
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVANE 516
+L YG PGTGKT A++ E
Sbjct: 55 MLFYGSPGTGKTSTILALSRE 75
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 352 GGCRKQLAQIKEMVELPLRHPSLFKAIGVKP-PRGILMYGPPGTGKTLI 495
G ++ +K+M + P+L ++ V P+GI +YG G GKT +
Sbjct: 87 GSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTAL 134
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 436 VKPPRGILMYGPPGTGKTLIARAVANETGAF 528
VKP +L+ GPP +GK + + + G+F
Sbjct: 277 VKPRTKLLLLGPPKSGKKTLLSRLFFQIGSF 307
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 466 GPPGTGKTLIARAVANETGAFFFLIN 543
GP GTGKT +AV+ G F+ N
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNVFVFN 1915
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 457 LMYGPPGTGKT 489
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 699 LSXFTVGFLSLWCNSIEFINEDNSRR 622
++ +TV ++LW +++++ +D RR
Sbjct: 630 VAAYTVKIIALWGRAVKYLKQDGKRR 655
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 439 KPPRGILMYGPPGTGKTLIARAVA 510
+P L GP G GKT + +A+A
Sbjct: 530 RPLASFLFLGPTGVGKTALTKALA 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,286
Number of Sequences: 5004
Number of extensions: 58527
Number of successful extensions: 281
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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