Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0726
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 140 7e-34
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 128 4e-30
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 126 1e-29
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 118 3e-27
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 6e-26
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 7e-26
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 109 2e-24
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 107 1e-23
SB_19460| Best HMM Match : AAA (HMM E-Value=0) 104 8e-23
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 101 4e-22
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 98 7e-21
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 1e-19
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 88 7e-18
SB_28977| Best HMM Match : AAA (HMM E-Value=0) 63 8e-15
SB_30385| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 4e-14
SB_732| Best HMM Match : AAA (HMM E-Value=0) 73 3e-13
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 68 8e-12
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044) 57 2e-08
SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25) 43 3e-04
SB_6656| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 39 0.003
SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 33 0.29
SB_54124| Best HMM Match : AAA (HMM E-Value=7.8e-08) 32 0.39
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 32 0.39
SB_11032| Best HMM Match : AAA (HMM E-Value=3.5) 32 0.51
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 31 0.68
SB_380| Best HMM Match : AAA (HMM E-Value=0.14) 31 0.68
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 31 0.68
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 30 1.6
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2) 29 3.6
SB_48716| Best HMM Match : Galactosyl_T (HMM E-Value=1.2) 28 6.3
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2) 28 6.3
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23) 28 6.3
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 28 6.3
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 28 6.3
SB_53844| Best HMM Match : SRCR (HMM E-Value=0) 28 8.4
SB_35950| Best HMM Match : SRCR (HMM E-Value=0) 28 8.4
SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9) 28 8.4
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 169 bits (412), Expect = 1e-42
Identities = 78/139 (56%), Positives = 101/139 (72%)
Frame = +1
Query: 274 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRG 453
VIH G IK++ E A V + IGG + Q+ ++EM+E+PL +P LF A GV PPRG
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEMPLTNPELFTAYGVPPPRG 292
Query: 454 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 633
IL+YGP GTGKT+IARAVANETG FF INGPE++S+ GE+E+ LR+ F EA SP+I
Sbjct: 293 ILLYGPSGTGKTMIARAVANETGVHFFCINGPEVLSRYYGETEARLREIFTEAQNKSPSI 352
Query: 634 IFIDELDAIAPKREKTHGE 690
+FIDELDA+ P+R+K E
Sbjct: 353 VFIDELDALCPRRDKVQNE 371
Score = 136 bits (328), Expect = 2e-32
Identities = 63/118 (53%), Positives = 82/118 (69%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V + D+GG ++KE VE PL+HP F+ +G++PPRGILMYGPPG KTLIARA+A
Sbjct: 534 VHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQRLGIRPPRGILMYGPPGCSKTLIARALAT 593
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHG 687
E+G F I GPE+ SK GESE +R+ F +A +P+I+F DELDAIA +R T G
Sbjct: 594 ESGLNFIAIKGPELFSKWVGESEKAVREVFLKARATAPSIVFFDELDAIAGQRNSTGG 651
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 140 bits (340), Expect = 7e-34
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = +1
Query: 181 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGC 360
D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGC
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGC 163
Query: 361 RKQLAQIKE 387
RKQLAQIKE
Sbjct: 164 RKQLAQIKE 172
Score = 125 bits (302), Expect = 3e-29
Identities = 59/131 (45%), Positives = 84/131 (64%)
Frame = +1
Query: 304 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 483
RE E N V +DDIGG +++E+V+ P+ HP F G+ P +G+L YGPPG G
Sbjct: 298 RETVVEVPN-VSWDDIGGLEGVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 356
Query: 484 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 663
KTL+A+A+ANE A F I GPE+++ GESE+N+R F++A +P ++F DELD+IA
Sbjct: 357 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIA 416
Query: 664 PKREKTHGEXG 696
R G+ G
Sbjct: 417 KSRGGNVGDGG 427
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 128 bits (309), Expect = 4e-30
Identities = 64/119 (53%), Positives = 81/119 (68%)
Frame = +1
Query: 316 EEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLI 495
EE N V Y +IGG Q +I+E VELPL H L+K IG+ PPRG+L+YGPPG GKT++
Sbjct: 156 EEKPN-VSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGIDPPRGVLLYGPPGCGKTML 214
Query: 496 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
A+AVA+ T A F + G E + K GE +R F A +N+PAIIFIDE+DAIA KR
Sbjct: 215 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR 273
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 126 bits (305), Expect = 1e-29
Identities = 56/113 (49%), Positives = 77/113 (68%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V Y DIGGC++Q+ +++E+VE PL HP F +G++PP+G+L++GPPGTGKTL ARAVAN
Sbjct: 81 VTYSDIGGCKEQIDKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 140
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
T A F + G E++ K GE +R+ FE A I+F DE+DAI R
Sbjct: 141 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIVFFDEIDAIGGAR 193
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 118 bits (285), Expect = 3e-27
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 5/118 (4%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
V +D +GG KQ+ +KEM+ PL +P +F + PPRG+L +GPPGTGKTL+ARA+AN
Sbjct: 881 VKFDSVGGLNKQIQALKEMILFPLVYPEVFDKFKITPPRGVLFFGPPGTGKTLVARALAN 940
Query: 514 ETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
E FF+ G + +SK GESE LR F++A P+IIF DE+D +AP R
Sbjct: 941 ECSQGDKKVSFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVR 998
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 114 bits (275), Expect = 6e-26
Identities = 54/121 (44%), Positives = 80/121 (66%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
+ + D+GG +I + ++LPL HP LF A G++ G+L+YGPPGTGKTL+A+AVA
Sbjct: 809 ISWKDVGGLDSVKEEILDTIQLPLLHPELFAA-GLRRS-GVLLYGPPGTGKTLMAKAVAT 866
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEX 693
E F + GPE+++ G+SE N+R+ F A SP +IF DELD++AP R ++ G+
Sbjct: 867 ECSLNFLSVKGPELINMYVGQSEQNVREVFSRAQAASPCVIFFDELDSLAPNRGRS-GDS 925
Query: 694 G 696
G
Sbjct: 926 G 926
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 114 bits (274), Expect = 7e-26
Identities = 53/125 (42%), Positives = 84/125 (67%), Gaps = 14/125 (11%)
Frame = +1
Query: 340 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 519
Y+ +GG KQ+ +IKE++ELP++HP LF+A+G+ P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVKHPELFEALGIDQPKGVLLYGPPGTGKTLLARAVAHHT 235
Query: 520 GAFFFLINGPEIMSKLAGESESNLRKA--------------FEEADKNSPAIIFIDELDA 657
F ++G E++ K GE +R+ F ++ +++P+IIF+DE+D+
Sbjct: 236 ECTFIRVSGSELVQKFIGEGARMVRELFVMARHGENLQAMYFVDSREHAPSIIFMDEIDS 295
Query: 658 IAPKR 672
I R
Sbjct: 296 IGSSR 300
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 109 bits (263), Expect = 2e-24
Identities = 51/116 (43%), Positives = 76/116 (65%)
Frame = +1
Query: 328 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 507
++V + DIGGC L Q+ +++ + + HP +F +GV P G L++GPPG GKTL+A A+
Sbjct: 672 SSVKFADIGGCSNTLEQVGKLL-VHMCHPEVFTTLGVTPTTGFLLHGPPGCGKTLLAHAI 730
Query: 508 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKRE 675
A E F + EI+S ++GESE +R+ F A +P I+F+DE+DAI PKRE
Sbjct: 731 AGELEMPFLKLAATEIVSGVSGESEEKVRELFTSAVAQAPCILFLDEIDAITPKRE 786
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 107 bits (256), Expect = 1e-23
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = +1
Query: 400 PLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 579
P++HP F A+G+ P GIL+ GPPG GKTL+A+A+ANE+G F + GPE+++ GES
Sbjct: 2 PVQHPEEFSALGLTHPPGILLAGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGES 61
Query: 580 ESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
E +R+ F+ A ++P +IF DELD++ P+R
Sbjct: 62 ERAVRQVFQRARNSAPCVIFFDELDSLCPRR 92
>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
Length = 340
Score = 104 bits (249), Expect = 8e-23
Identities = 47/121 (38%), Positives = 73/121 (60%)
Frame = +1
Query: 325 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARA 504
L +DD+GG +++ +E PL HP F +G++ PRG+L+YGPPG KT + RA
Sbjct: 7 LQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPRGVLLYGPPGCCKTTLVRA 66
Query: 505 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTH 684
A+ T F ++ ++ S G++E LR+ F +A +PAI+F+DELD++A KR
Sbjct: 67 AASSTHCTFMSLSCAQLFSSYVGDAERTLRELFLKARATAPAILFLDELDSLAGKRGNNL 126
Query: 685 G 687
G
Sbjct: 127 G 127
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 103 bits (247), Expect = 1e-22
Identities = 46/97 (47%), Positives = 66/97 (68%)
Frame = +1
Query: 274 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRG 453
V+ D +P+ + E Y DIGG Q+ +IKE VELPL HP L++ +G+KPP+G
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPLTHPELYEEMGIKPPKG 416
Query: 454 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 564
+++YG PGTGKTL+A+AVAN+T A F + G E++ K
Sbjct: 417 VILYGQPGTGKTLLAKAVANQTSATFLRVVGSELIQK 453
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 101 bits (243), Expect = 4e-22
Identities = 47/109 (43%), Positives = 67/109 (61%)
Frame = +1
Query: 346 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA 525
D+ GC + +I E V L++P + +G K P+G ++ GPPGTGKTL+A+AVA E G
Sbjct: 49 DVAGCEEAKLEIMEFVNF-LKNPQQYHELGAKIPKGAILSGPPGTGKTLLAKAVAGEAGV 107
Query: 526 FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
F I+G E + G + +R F +A KN+P IIFIDE+DA+ R
Sbjct: 108 PFLSISGSEFLEMFVGVGPARVRDLFAQARKNAPCIIFIDEIDAVGRAR 156
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 97.9 bits (233), Expect = 7e-21
Identities = 46/113 (40%), Positives = 67/113 (59%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
+G++++GG ++E + P + LF ++ G+L+YGPPGTGKTL+A VA
Sbjct: 664 LGWENVGGLGPVKGVLQETLLWPSKFAGLFAKCPLRLRGGLLLYGPPGTGKTLLAGVVAK 723
Query: 514 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
E G F I GPE++SK G SE +R F A P I+F DE D++AP+R
Sbjct: 724 ECGLNFISIKGPELLSKYIGASEQAVRDMFTRAQSAKPCILFFDEFDSLAPRR 776
>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Frame = +1
Query: 349 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAF 528
+ G + +KE+V+ PL +P F +G+ P+GIL+ G PG GKTL+ + G
Sbjct: 213 LSGLDDSIKMLKELVQFPLYYPESFSHLGINGPKGILLVGAPGVGKTLLVHKATVDCGIK 272
Query: 529 FFLINGPEIMSKLAGESESNLRKAFEE---ADKNSPAIIFIDELDAIAPKREKTHGE 690
NG ++ AGESE NLR+ F + A + P ++FIDELDA+ PKR + E
Sbjct: 273 LVSTNGTDVFGPHAGESEENLRRVFNKARYASRFGPCVLFIDELDALCPKRGSSGNE 329
Score = 91.1 bits (216), Expect = 8e-19
Identities = 44/121 (36%), Positives = 68/121 (56%)
Frame = +1
Query: 325 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARA 504
L +DD+GG +++ +E PL HP F +G++ PRG+L+YGPPG KT + RA
Sbjct: 478 LQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPRGVLLYGPPGCCKTTLVRA 537
Query: 505 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTH 684
A+ T F ++ ++ S G++E LR E P ++F+DELD++A KR
Sbjct: 538 AASSTHCTFMSLSCAQLFSSYVGDAERTLR----ELVLQLPLLLFLDELDSLAGKRGNNL 593
Query: 685 G 687
G
Sbjct: 594 G 594
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 96.3 bits (229), Expect = 2e-20
Identities = 53/127 (41%), Positives = 78/127 (61%)
Frame = +1
Query: 292 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 471
E ++R+ ++ N V + DI + ++E V LPL P F+ I +P RG+LM GP
Sbjct: 234 EALERDILQKNPN-VHWADIADLHEAKKLLEEAVVLPLLMPDYFQGIR-RPWRGVLMVGP 291
Query: 472 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDEL 651
PGTGKT++A+AVA E G FF ++ + SK GESE +R FE A +P+ IF+DE+
Sbjct: 292 PGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPSTIFVDEI 351
Query: 652 DAIAPKR 672
D+I +R
Sbjct: 352 DSICSRR 358
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/99 (45%), Positives = 63/99 (63%)
Frame = +1
Query: 376 QIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEI 555
+++E+VE LR+P FK +G K P G+L+ G PGTGKTL+A+AVA E G FF +G E
Sbjct: 142 ELQEVVEF-LRNPEKFKRLGGKLPTGVLLIGSPGTGKTLLAKAVAGEAGVPFFFCSGSEF 200
Query: 556 MSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
G + +R F A +++P I+F+DELDAI R
Sbjct: 201 DEMFVGVGAARVRNLFAAAKEHAPCIVFVDELDAIGGSR 239
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 87.8 bits (208), Expect = 7e-18
Identities = 42/119 (35%), Positives = 67/119 (56%)
Frame = +1
Query: 340 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 519
+ D+ G ++ ++ E V+ L+ + +G K P+G L+ GPPGTGKTL+A+AVA E
Sbjct: 124 FKDVAGMQEAKMEVMEFVDY-LKSAGRYTQLGAKIPKGALLVGPPGTGKTLLAKAVATEA 182
Query: 520 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEXG 696
F + G + + AG + +R F A K +P I++IDE+DAI R+ + G
Sbjct: 183 DVPFLSMAGSDFVEMFAGVGSARVRDLFTRARKLAPCIVYIDEVDAIGRSRKSSRSMGG 241
>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
Length = 442
Score = 62.9 bits (146), Expect(2) = 8e-15
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +1
Query: 475 GTGKTLIARAVANETG-AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDEL 651
GTGK+ +A+AVA E + F ++ +++SK GESE +++ FE A +N P+IIFIDE+
Sbjct: 175 GTGKSYLAKAVATEANNSTFISVSSSDLVSKWLGESERLVKQLFELARENKPSIIFIDEV 234
Query: 652 DAIAPKREKTHGEXGK 699
D++ R + E +
Sbjct: 235 DSLCGSRSENESESAR 250
Score = 35.1 bits (77), Expect(2) = 8e-15
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 334 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPP-RGILMYG 468
V + DI G +KE V LP++ P LF G + P RGIL+YG
Sbjct: 94 VKWSDIAGLESAKEALKEAVILPIKFPHLF--TGKRTPWRGILLYG 137
>SB_30385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/88 (37%), Positives = 49/88 (55%)
Frame = +1
Query: 349 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAF 528
+ G + +KE+V+ PL +P F +G+ P+GIL+ G PG GKTL+ + G
Sbjct: 43 LSGLDDSIKMLKELVQFPLYYPESFSHLGINGPKGILLVGAPGVGKTLLVHKATVDCGIK 102
Query: 529 FFLINGPEIMSKLAGESESNLRKAFEEA 612
NG ++ AGESE NLR+ F +A
Sbjct: 103 LVSTNGTDVFGPHAGESEENLRRVFNKA 130
>SB_732| Best HMM Match : AAA (HMM E-Value=0)
Length = 388
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 9/90 (10%)
Frame = +1
Query: 430 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESNLRKAFE 606
+G+K +GIL++GPPGTGKTL+AR + +I+GPE+++K GESE+N+RK F
Sbjct: 177 MGLKHVKGILLFGPPGTGKTLMARQIGTMLNTREPKIISGPEVLNKFVGESEANIRKLFA 236
Query: 607 EA--------DKNSPAIIFIDELDAIAPKR 672
EA D ++ +I DE DA+ R
Sbjct: 237 EAEEEQKRFGDNSALHLIIFDEFDAVCKSR 266
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 70.1 bits (164), Expect = 2e-12
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 400 PLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 561
P++HP F A+G+ P GIL+ GPPG GKTL+A+A+ANE+G F + GPE+++
Sbjct: 2 PVQHPEEFSALGLTHPPGILLAGPPGCGKTLLAKAIANESGINFISVKGPELLN 55
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 67.7 bits (158), Expect = 8e-12
Identities = 24/62 (38%), Positives = 42/62 (67%)
Frame = +1
Query: 292 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 471
+P+ E + Y D+GG +Q+ +++E++ELPL +P LF+ +G+ PP+G L++GP
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQRVGIAPPKGCLLFGP 177
Query: 472 PG 477
PG
Sbjct: 178 PG 179
>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
Length = 430
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 627
R +L YGPPGTGKT+ A+++A +G + ++ G +++ + E + + K F+ A+ +
Sbjct: 330 RNLLFYGPPGTGKTMFAKSLARHSGMDYAVMTGGDVV-PMGKEGVTAMHKVFDWAETSRR 388
Query: 628 AI-IFIDELDAIAPKREK 678
+ +F+DE DA KR +
Sbjct: 389 GVLLFVDEADAFLRKRSQ 406
>SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25)
Length = 420
Score = 42.7 bits (96), Expect = 3e-04
Identities = 35/120 (29%), Positives = 58/120 (48%)
Frame = +1
Query: 325 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARA 504
LN+V D+ G LA +KE + P + G+ RG L+YGPPG GK+ +A
Sbjct: 187 LNSVILDE-GIAEGILADVKEFIG----SPRWYMDRGIPYRRGYLLYGPPGCGKSSFIQA 241
Query: 505 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTH 684
+A E ++N + ++ L A + S II ++++DA KR++T+
Sbjct: 242 LAGELDYSICVMNLSD-----RSLTDDRLNHLMSVAPQQS--IILLEDIDAAFVKRDETN 294
>SB_6656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES--ESNLRKAFEEADKN 621
+ +L+ GP G GK ++ + ETGA F + I K G++ L F+ A +
Sbjct: 208 KSVLITGPRGVGKKMLVHCICTETGANLFDLTAANIAGKYPGKAGLAMLLHMVFKVARQL 267
Query: 622 SPAIIFIDELDAIAPKR 672
P+++FI + + K+
Sbjct: 268 QPSVVFIGDAERTFVKK 284
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 550 EIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKR 672
+I G+ +R AF A + +PAIIFIDELDAI KR
Sbjct: 162 QIQEMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 202
>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 609
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEA----D 615
IL+ GP G+GKTL+A+ +A F + + + + GE ES + K +EA +
Sbjct: 273 ILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYVGEDIESVIAKLLQEAGGNVE 332
Query: 616 KNSPAIIFIDELDAI 660
K I+F+DE+D I
Sbjct: 333 KAQQGIVFLDEVDKI 347
>SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES 585
R +L+ G PGTGKT IA +A G F I G EI S ++E+
Sbjct: 170 RAVLIAGQPGTGKTAIAMGMAQSLGPDTPFTSIAGSEIFSLEMSKTEA 217
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 448 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 564
+ L+ GPPG GKT A V E G + +N + SK
Sbjct: 272 KAALLSGPPGVGKTTTATLVCQELGYSYVEMNASDARSK 310
>SB_54124| Best HMM Match : AAA (HMM E-Value=7.8e-08)
Length = 251
Score = 32.3 bits (70), Expect = 0.39
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVA---NETGAF----FFLINGPEIMSKLAGESESNLRKAFEEA 612
++ G PGTGKT +AR +A +E G + ++ + GE+ + + A + A
Sbjct: 16 VMFVGNPGTGKTTMARMMAGILHEAGVIKRNKVIEVQRTALVGRYIGETGTKTKGAIDRA 75
Query: 613 DKNSPAIIFIDELDAIAPKREKTHG 687
K S ++ IDE ++ + +K +G
Sbjct: 76 -KGS--VLLIDEAYRLSSESDKNYG 97
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 445 PRGILMYGPPGTGKTLIARAVANETGAFFFLIN 543
PR IL+ G PG GKT + A+A +G IN
Sbjct: 1617 PRPILLEGSPGVGKTSLVSAIAKASGHELVRIN 1649
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 430 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 576
+ V G+L+ GP G+GKT + VA+ G PEIM G+
Sbjct: 113 LAVAAGSGVLLEGPVGSGKTCLVEHVASMCGR----STPPEIMKVQLGD 157
>SB_11032| Best HMM Match : AAA (HMM E-Value=3.5)
Length = 111
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 571 GESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGE 690
GE E +R F A PA+IF+DE+D++ +R T GE
Sbjct: 2 GEGEKMVRAMFAVARCYLPAVIFMDEIDSLLTQR--TDGE 39
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 454 ILMYGPPGTGKTLIARAVANE 516
+L YGPPGTGKT AVA +
Sbjct: 13 LLFYGPPGTGKTSTILAVAKQ 33
>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
Length = 508
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 442 PPRGILMYGPPGTGKTLIARAVANETGAF 528
PP +++ GP G GKTL R +A + G F
Sbjct: 118 PPIRLMIVGPKGAGKTLHGRELARKLGLF 146
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 403 LRHPSLFKAIGV-KPPRGILMYGPPGTGKTLIARAVANETGA 525
+R+P + A + +PP + + GPP +GKTL+A+ +A A
Sbjct: 304 MRNPRPYLAPHLPRPPCKVCVLGPPHSGKTLVAKQLAERYNA 345
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 433 GVKPPRGILMYGPPGTGKTL 492
G P L++GPPGTGKT+
Sbjct: 547 GTSRPHPYLIFGPPGTGKTI 566
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 286 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 465
DG+P++R +++ + ++ E + L + K G+ R I +
Sbjct: 51 DGKPVRRRMKKKKKKKNEEEARTPVYEETIVSNEFIPLCDDEIAKTKGKGLLNARVIFVI 110
Query: 466 GPPGTGKTLIARAVANETG 522
G PG+GKT +A+ +A +G
Sbjct: 111 GGPGSGKTELAKLLAESSG 129
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 478 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDE 648
+GKTLIARA NE A E+M K A E + KA + A ++ + ++E
Sbjct: 1655 SGKTLIARAGENEGNA--------EVMGKTADELKEKATKAAQNATESKTKALKLEE 1703
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 418 LFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
LFK+ +P + +L+ G PG GKT + + + N
Sbjct: 2463 LFKSKTKQPVKRVLLEGNPGVGKTTLLKKLVN 2494
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 418 LFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
LFK+ K + +L+ G PG GKT + + + N
Sbjct: 977 LFKSKTKKRMKRVLLEGNPGVGKTTLCKKLVN 1008
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 463 YGPPGTGKTLIARAVANETGAFFFLINGPE 552
+GP GTGKT +A+ + G F + N E
Sbjct: 1854 FGPAGTGKTESVKALGQQLGRFVLVFNCDE 1883
>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 457 LMYGPPGTGKTLIARAVANETG 522
L+ GPPG GKT +A +A G
Sbjct: 384 LLCGPPGLGKTTLAHVIAQHAG 405
>SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)
Length = 628
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 433 GVKPPRGILMYGPPGTGKTL 492
G P L++GPPGTGKT+
Sbjct: 587 GQSRPTPYLLFGPPGTGKTV 606
>SB_48716| Best HMM Match : Galactosyl_T (HMM E-Value=1.2)
Length = 323
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 406 RHPSLFKAIGVKPPRGILMYGPPGTGKTLI 495
RHP+L +IG+ P ++ P TGK +
Sbjct: 45 RHPALIDSIGITPRNNSHIFSPRITGKVFL 74
>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
Length = 323
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 140 SRTSWRLTVRSIVTTPSWSAGACAPSSSKWSKQIHHHF 253
+R S + + I ++ S SA A + SSS S HHH+
Sbjct: 174 ARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHY 211
>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
Length = 172
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 301 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 396
KREEE E L + + C+K+L ++E++E
Sbjct: 63 KREEELELLLETRTEKLSECKKRLLDLEEIIE 94
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 301 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 396
KREEE E L + + C+K+L ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695
>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1706
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 546 SIN*KEESSCFISNSTSNECFSGTRRPIHENAAWRLHSNSLE 421
S+N E+ +C +N S + +PI +N +L++ SL+
Sbjct: 1633 SVNLPEKPNCKGTNGVSTDTICPKNKPIDDNLTTKLYNGSLD 1674
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 286 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEM 390
D + + EEEEE +G+D+ G ++L +I+E+
Sbjct: 255 DDDETEDEEEEEEQPVMGWDEYGTSPQRLQRIREL 289
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 436 VKPPRGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKL 567
V+P + + GP G+GKT + +A A LING + KL
Sbjct: 32 VRPGEMLALMGPSGSGKTTLLNVLAGRMAKDAGDVLINGKHMNKKL 77
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +1
Query: 436 VKPPR-GILMYGPPGTGKTLIARAVANE 516
++P R I++ GPPG+GKT +A+ + ++
Sbjct: 1245 IRPDRIVIILRGPPGSGKTHVAKLIKDK 1272
>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
Length = 415
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 261 HDAKW*WICFDHFELDGAHAPADHEGV 181
H W IC+DH++L AH G+
Sbjct: 255 HAGAWGLICYDHWDLHDAHVACRQVGL 281
>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
Length = 501
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 261 HDAKW*WICFDHFELDGAHAPADHEGV 181
H W IC+DH++L AH G+
Sbjct: 318 HAGAWGLICYDHWDLHDAHVACRQVGL 344
>SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 217 EFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDD-IGGCRKQ 369
+++ + P PFCI+ VI G P+ R + + + N Y IG KQ
Sbjct: 117 QYREPQRPPPPFCILNVKKVIKHSGSPVYR-DPDSSQNRYQYSTLIGNSSKQ 167
>SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9)
Length = 208
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 418 LFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 513
LFK+ K + +L+ G PG GKT + + + N
Sbjct: 164 LFKSKTKKRMKRVLLEGNPGVGKTTLCKKLVN 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,722
Number of Sequences: 59808
Number of extensions: 461787
Number of successful extensions: 1435
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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