Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0726
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.69 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.69 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 576 FSRQLRHDLRSIN*KEESSCFISNSTSNEC 487
           F R +R DL S   +EE SC I     N C
Sbjct: 134 FKRTVRKDL-SYACREEKSCIIDKRQRNRC 162


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 576 FSRQLRHDLRSIN*KEESSCFISNSTSNEC 487
           F R +R DL S   +EE SC I     N C
Sbjct: 134 FKRTVRKDL-SYACREEKSCIIDKRQRNRC 162


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 555 DLRSIN*KEESSCFISNSTSNECFSGTRRPIHENAAWRLHSN 430
           DL +I+   ++S FI+  T    +S TRR   E+   R H++
Sbjct: 175 DLINIHLFHDASNFIAMETFPSVYSKTRRRALEHTLDRFHND 216


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 540 N*KEESSCFISNSTSNEC 487
           N  E ++C ISNS +N C
Sbjct: 165 NSPENNTCSISNSYTNGC 182


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = +2

Query: 149 SWRLTVRSIVTTPSWSAGACAPSSSKWSKQIHHHFASW 262
           SW   V  +   P W+ G    ++ + ++++H    +W
Sbjct: 155 SWDNVV--VAYEPVWAIGTGKTATPQQAQEVHEKLRNW 190


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 485 KHSLLVLLLMKQELSSF*LMDRRSCLSWRENRSQTSV 595
           KHS +V +LM ++ +S  L+    C +  +NR   ++
Sbjct: 115 KHSNIVKVLMIEQGASLSLITMELCGTTLQNRLDEAI 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,772
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)