Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0725
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10; Bur...    35   2.2  
UniRef50_A6CFH9 Cluster: 2-dehydro-3-deoxyphosphooctonate aldola...    33   6.7  
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10;
           Burkholderia|Rep: ATP/GTP-binding site motif A -
           Burkholderia cenocepacia MC0-3
          Length = 383

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 30/109 (27%), Positives = 46/109 (42%)
 Frame = -2

Query: 438 PQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 259
           PQ D V DT++ +PD +   +L R+  PL A       D AV           L E    
Sbjct: 10  PQTDRVADTMSVLPDDASVTELMRSFAPLLA-------DEAVTELVINRPQRILTETHRG 62

Query: 258 WHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTSVRKEIIEGTARSQ 112
           W AH L +    + +  F  +I  L TN+   ++  +   ++   AR Q
Sbjct: 63  WQAHDLPELD-FERLMAFAVAIATL-TNQSVSTEHPLLSALLPDNARLQ 109


>UniRef50_A6CFH9 Cluster: 2-dehydro-3-deoxyphosphooctonate aldolase;
           n=1; Planctomyces maris DSM 8797|Rep:
           2-dehydro-3-deoxyphosphooctonate aldolase - Planctomyces
           maris DSM 8797
          Length = 563

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 270 IRNLWHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTSVRKEIIEGTA 121
           + NL   H   +   I G+FCF   I      E+ PS ++  KE  +GTA
Sbjct: 3   LSNLIRRHSAPRLGMISGVFCFALLISISGCKEQTPSSSTANKEKSQGTA 52


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -2

Query: 375 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 235
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,055,107
Number of Sequences: 1657284
Number of extensions: 10547462
Number of successful extensions: 24036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24033
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)