Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0723
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 38 0.002
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.019
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 33 0.033
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.10
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 29 0.54
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 29 0.54
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 28 1.2
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 3.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.8
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 27 3.8
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 26 5.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 5.0
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 5.0
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 26 5.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 6.6
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 6.6
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 25 8.7
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 580 KRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVK 741
K + T QL L REFS + R +I L + E+ V IWFQNR+ K
Sbjct: 167 KSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAK 220
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.019
Identities = 27/84 (32%), Positives = 34/84 (40%)
Frame = +1
Query: 355 QEPVNFVNRRKKSVSPYLHHPYKTTSPSKSQGQRSPSLSSDSRNGTPSPPLAHPEELLPG 534
Q PV + R S +P H TS S R PS+ S S P PP ++ + P
Sbjct: 208 QAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASV--PPVPPSSYVLQQRPN 265
Query: 535 YSKDLKRLPLKEDSSKRIRTAFTG 606
D R K+DS I F G
Sbjct: 266 RVDDHGRFHFKDDSYLPIPHPFLG 289
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 33.5 bits (73), Expect = 0.033
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 565 KEDSSKRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLK--LSEKQVKIWFQNRKV 738
+E K+ R T + LE+ F S + R E++ +LK ++ ++++IWFQN++
Sbjct: 29 EETHQKKRRRRTTDAEATLLEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQ 88
Query: 739 KLXK 750
L +
Sbjct: 89 SLRR 92
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.10
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +1
Query: 235 PFLEQLHFRYPILHQLPHQPE---LVESQNESRPFDSFLKTEDQEPVNFVNRRKKSVSPY 405
P + + R LH+L PE + E N PFD F +ED + F + + +
Sbjct: 373 PIINPITSRQLTLHELDTSPEDSAIEEDPNFEIPFDPFFHSED---IEFEHTASALILLW 429
Query: 406 LHHPYKTTSPSKSQGQRSP 462
HP+ S + + Q P
Sbjct: 430 APHPFNKRSGATKRAQDVP 448
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 301 VESQNESRPFDSFLKTEDQEPVNFVNRRKKSVSPYLHHPYKTTSPSKSQGQRSPS 465
VE+++ + PFD+F + + + + + H Y T SP + GQ +P+
Sbjct: 631 VENRSANSPFDNFQHIDHSTELGYASNTSQQYQQTSHPAYTTMSPIE-YGQAAPA 684
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 63 EGLKEIRHGQRLFQSIHKFNRLTLGSTTQVLAVP--ISGKLKQSAKFRSATS 212
E LKE + ++ +H N G+ + V A+P +S + A SATS
Sbjct: 514 ENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATS 565
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.5 bits (63), Expect = 0.54
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +1
Query: 196 FGLQHQRSPDLFRPFLEQLHFRYPILHQLPHQPELVES---QNESRPFDSFLKT-EDQEP 363
F + SP+ L+ L R I Q E + S + + D +K E ++
Sbjct: 106 FNSEKPLSPEKISTMLQHLQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVIIKLKEGKQK 165
Query: 364 VNFVNRRKKSVSPYLHHPYKTTSPSKSQGQRSPSLS 471
VN + R K + LH P+ ++PS + Q++ L+
Sbjct: 166 VNLLKRSLKRYNE-LHIPFDISTPSSEEKQQASGLN 200
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Frame = -3
Query: 739 SLFYSGTKFSLVSQTALVARRSLFFSISTNT--CSLRTLF--LILEVECR*MRF*CVYWN 572
S++ SG ++ +Q LVA R L S TNT L+ + + + Y
Sbjct: 377 SMYTSGKIVAMYAQVCLVASRILGDSTLTNTGLTKLKQAMARFTTNTQMYPLVYDTTYKG 436
Query: 571 LLLKVNVSSPLSIPGEVLLDEPAVDWEFH-FCCRLI 467
++ SSPL+ G ++ W +H + C +I
Sbjct: 437 IISTAGYSSPLADYGNTYYNDHHFHWGYHIYACAVI 472
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 112 TSLIGSHLDPRPKFLPYPYPGNLNNLLSFGLQHQRSPDLF 231
T + G L P+P +P P P +LN L+ + P++F
Sbjct: 594 TPVPGRTLSPKPTRIPTPIPSSLN----VSLESSKKPEIF 629
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.9
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Frame = +1
Query: 283 PHQPELVESQNESRPFDSFLK---TEDQ--EPVNFV----NRRKKSVSPYLHHPYKTTSP 435
P++PEL+ S + S DS +K ++DQ E +FV N + + P + P
Sbjct: 179 PNEPELLNSLDPSL-IDSLMKMGISQDQIAENADFVKAYLNESAGTPTSTSAPPIPPSIP 237
Query: 436 SKSQGQRSPSLSSDS-------RNGT-PSPPLAHPEELLP 531
S +R PSLS+ + NGT SPP + P + P
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 469 SSDSRNGTPSPPLAHPEELLPGYSKDLKRLPLKEDSS 579
S + +NGT + L+H +E P DL L +D++
Sbjct: 727 SIEEKNGTKTACLSHKDECFPNTDSDLTVLVRYDDNA 763
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +1
Query: 307 SQNESRPFDSFLKTEDQEPVNFVNRRKKSVSPYLHHPYKTTSPSKSQ-GQRSPSLSSDSR 483
SQ+ + S + + ++E N +N K S LH P+ T + P L+ R
Sbjct: 205 SQSPTHSEASSVLSSEEEEENVINSSKSVPSFDLHDPFSQTFGKECPISTAPPVLNIGDR 264
Query: 484 NGTPSPPLAHPEELLP 531
+ PP+ P P
Sbjct: 265 SLETPPPIPSPRPPQP 280
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 514 PEELLPGYSKDLKRLPLKEDSSKRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLK 693
P ELLP YS D+ L K + +R+ + G L+L + N +L +++A+ L+
Sbjct: 184 PYELLPDYSPDMSVLD-KRSHPRPLRSEWKGPP-LDLSND--ENRHLLHPAELQLAATLR 239
Query: 694 L 696
L
Sbjct: 240 L 240
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 409 ASMAIQTSSFDSRNSLALDPRFSGSYQKASTHFGSLLVPVDAAAGAVSDI 260
A + T SFD+ ++ +P F G + G+L+ +DA G VS +
Sbjct: 40 AKTTLLTKSFDNIGQMSCNPAFGGIGK------GTLMREIDALGGVVSGV 83
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 376 NRRKKSVSPYLHHPYKTTSPSKSQGQRSPSLSSDSRNGTPSPPLAH--PEELLPGYSKDL 549
N+ SVS H K+ P+ S+ + S+N SPP E L S+ L
Sbjct: 600 NKFPNSVSRNTHFESKSPHPNYSRTPHETYSKASSKNVPLSPPKQRVVNEHALNIMSEKL 659
Query: 550 KRLPLKEDS 576
+R LKE +
Sbjct: 660 QRTNLKEQT 668
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +1
Query: 331 DSFLKTEDQEPVNFVNRRKKSVSPYLHHPYKTTSPSKSQGQRSPSLSSDSRNGTPSP--- 501
+S + ++D+E NF + + H T+S S G S S S + + SP
Sbjct: 133 NSEVVSDDEEDGNFASIPELHEDNEYHSNLATSSNPFSDGSSSKSASLTASSAAASPTVS 192
Query: 502 --PLAHPEELLPGYSKDL 549
P + E L P SK L
Sbjct: 193 FSPASTSENLTPTSSKSL 210
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +1
Query: 262 YPILH---QLPHQPELVESQNESRPFDSFLK 345
Y ++H LPH +LV N +R F FLK
Sbjct: 190 YKVVHCHPPLPHVDDLVNKVNRTRDFYQFLK 220
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/72 (25%), Positives = 25/72 (34%)
Frame = +1
Query: 259 RYPILHQLPHQPELVESQNESRPFDSFLKTEDQEPVNFVNRRKKSVSPYLHHPYKTTSPS 438
R P H+ + P P S + + PV +R + S S HP +
Sbjct: 111 RTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHR 170
Query: 439 KSQGQRSPSLSS 474
RSP SS
Sbjct: 171 YDDYSRSPPYSS 182
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 244 EQLHFRYPILHQLPHQPELVESQNESRPFDS 336
+Q H P H LPH P + E +E S
Sbjct: 228 QQAHQTTPQNHSLPHPPNMFEPPDEDHQLPS 258
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 544 DLKRLPLKEDSSKRIRTAFTGTQLLE 621
DLK L L+ED++K + + T + LLE
Sbjct: 20 DLKILLLEEDTTKIVSSCITQSNLLE 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,440
Number of Sequences: 5004
Number of extensions: 66610
Number of successful extensions: 268
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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