Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0723
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    78   1e-16
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    74   1e-15
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    71   9e-15
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    71   2e-14
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    67   2e-13
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    64   1e-12
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    62   4e-12
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    61   1e-11
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        40   2e-05
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.33 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   4.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.1  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   9.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 77.8 bits (183), Expect = 1e-16
 Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
 Frame = +1

Query: 235 PFLE-QLHFRYPILHQLPH-QPELVESQNESRPFDSFLKTEDQEPVNFVNRRKKSVSPYL 408
           P +E Q+H +    H  PH QP+  + Q++S+     L+  +Q  +    ++ ++ S   
Sbjct: 162 PLVESQMHHQMHTQH--PHMQPQ--QGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217

Query: 409 H---HPYKTTSPSKSQGQRSPSLSSDSRNGTPSPPLAH-PEELLPGYSKDLKRLPLKEDS 576
               HP +     + QG  +  LS   +        A+ P  L P      +R       
Sbjct: 218 QPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFER------- 270

Query: 577 SKRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
            KR R  +T  Q LELE+EF  N YL+R RRIEIA  L L+E+Q+KIWFQNR++K  K
Sbjct: 271 -KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 327


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 74.1 bits (174), Expect = 1e-15
 Identities = 35/57 (61%), Positives = 44/57 (77%)
 Frame = +1

Query: 580 KRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           KR RT++T  Q LELE+EF  N YL+R RRIEIA  L L+E+Q+KIWFQNR++K  K
Sbjct: 9   KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 65


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 71.3 bits (167), Expect = 9e-15
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +1

Query: 580 KRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           +R R  +T  Q LELE+EF  N YL+R RRIEIA  L L+E+Q+KIWFQNR++KL K
Sbjct: 9   RRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 65


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 34/57 (59%), Positives = 42/57 (73%)
 Frame = +1

Query: 580 KRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           KR R  +T  Q LELE+EF  N YL+R RRIEIA  L L+E+Q+KIWFQNR++K  K
Sbjct: 9   KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 65


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 30/57 (52%), Positives = 42/57 (73%)
 Frame = +1

Query: 580 KRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           KR RTAF+G QL  L+REF+ N YL+  RR +++  L L+E Q+KIWFQN++ K+ K
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 64.5 bits (150), Expect = 1e-12
 Identities = 29/57 (50%), Positives = 41/57 (71%)
 Frame = +1

Query: 580 KRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           KR RTAF+  QL  L+REF+ N YL+  RR +++  L L+E Q+KIWFQN++ K+ K
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKK 77


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 62.5 bits (145), Expect = 4e-12
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +1

Query: 577 SKRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           ++R RTAFT  QL+ LE +F    YLS   R+ +A  L L+E QVKIWFQNR+ K  K
Sbjct: 8   ARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 65


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 29/59 (49%), Positives = 38/59 (64%)
 Frame = +1

Query: 565 KEDSSKRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRKVK 741
           K   +++ RT FT  QLL LE++F    YL+   R E +S L L+E QVKIWFQNR+ K
Sbjct: 5   KHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAK 63


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 649 YLSRLRRIEIASRLKLSEKQVKIWFQNRKVKLXK 750
           YL+   R E+A+ L L++ QVKIWFQNR+ K  K
Sbjct: 5   YLALPERAELAASLGLTQTQVKIWFQNRRSKYKK 38


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 295 ELVESQNESRPFDSFLKTEDQEPVNFVNRRKKSVSPYLHHPYKTTS 432
           +L++ +NE+ PF   L T D++ V + N ++K        P +TTS
Sbjct: 134 DLLKKRNENDPFLKRLITGDEKWVVYNNIKRKRSWSRPREPAQTTS 179


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 136 DPRPKFLP--YPYPGNLNNLLSFGLQHQRSPDLFRPFLEQLHFRYPILHQLPHQPELVES 309
           D  P FL   + + G  N+LL+  +    + D  +PF E L+FR   L+ +  + E  +S
Sbjct: 402 DAIPAFLSSLFLWLGYCNSLLNPIIYATLNRDFRKPFREILYFRCSNLNHMMRE-EFYQS 460

Query: 310 Q 312
           Q
Sbjct: 461 Q 461


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 433  PSKSQGQRSPSLSSDSRNGTPSPPLAHP 516
            PSK+   ++     +  +GT  PP+ HP
Sbjct: 1739 PSKAMQFQTFPHPGNGHSGTMGPPVGHP 1766


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 668 LLNLDKYMFIENSLSNSRS*VPVN 597
           LLN  K  F EN +++ R   P N
Sbjct: 81  LLNFPKRSFSENMINDHRQPAPTN 104


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 402 WRYRLLPSIHEIHWLLILGFQEAIK 328
           WR  +  ++H  HW L+  F+  I+
Sbjct: 199 WREDIGINLHHWHWHLVYPFEGDIR 223


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 743 NFTFLFWNQIFTCFSDSFSREAISILLNLDK 651
           NFT    N+           EA+S+L+N  K
Sbjct: 481 NFTIEILNKTVLAVVRQSEEEAVSLLINFSK 511


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 131 CEPIKLVYGLKESLAMSDFFESFVSLIR 48
           C+     YG K  + +S     F SL+R
Sbjct: 20  CDGCAAPYGYKNIMTLSQDTSHFASLVR 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,768
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)