Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0722
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.39 
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   6.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 517  FQMTSFITVDTSPNHFRWIHCSVLLTFTLLISTVFCSNKNLYKFDNEFIIFKT 359
            FQ+  F      P +  +I CSV ++ +L    +     N+Y     FII+ T
Sbjct: 1989 FQLNLFSDTPDQPEYQSYIVCSVYISASLFWYILHSLVPNIYALSTPFIIYAT 2041


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 454 SVLLTFTLLISTVFCSNKNLYKFDNEFIIFKTIT*LSIIESYY 326
           +V L + LL S +   N N+ K + EF++  TIT LS  E+ Y
Sbjct: 136 NVNLQYALLNSIIDKMNNNIKKPNLEFLMPCTITKLSKGENIY 178


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 502 FITVDTSPNHFRWIHCSVLLTFTLLISTVFCSNKNLY 392
           F+T D   NH   I C+ L +    + T+F  NK+LY
Sbjct: 704 FLTNDWVDNHLI-ILCASLHSLKAHLPTIFDENKSLY 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,627
Number of Sequences: 5004
Number of extensions: 36230
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)