BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0722 (600 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 29 0.39 SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 6.4 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 8.5 >SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|Schizosaccharomyces pombe|chr 1|||Manual Length = 2397 Score = 29.5 bits (63), Expect = 0.39 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -3 Query: 517 FQMTSFITVDTSPNHFRWIHCSVLLTFTLLISTVFCSNKNLYKFDNEFIIFKT 359 FQ+ F P + +I CSV ++ +L + N+Y FII+ T Sbjct: 1989 FQLNLFSDTPDQPEYQSYIVCSVYISASLFWYILHSLVPNIYALSTPFIIYAT 2041 >SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 25.4 bits (53), Expect = 6.4 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -3 Query: 454 SVLLTFTLLISTVFCSNKNLYKFDNEFIIFKTIT*LSIIESYY 326 +V L + LL S + N N+ K + EF++ TIT LS E+ Y Sbjct: 136 NVNLQYALLNSIIDKMNNNIKKPNLEFLMPCTITKLSKGENIY 178 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 25.0 bits (52), Expect = 8.5 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 502 FITVDTSPNHFRWIHCSVLLTFTLLISTVFCSNKNLY 392 F+T D NH I C+ L + + T+F NK+LY Sbjct: 704 FLTNDWVDNHLI-ILCASLHSLKAHLPTIFDENKSLY 739 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,051,627 Number of Sequences: 5004 Number of extensions: 36230 Number of successful extensions: 62 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 262236260 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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