Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0719
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 504 IDNQPAP*CFSLKFSSSKRSPYI 436
           + NQ +  CFSLK  + K  P++
Sbjct: 517 LGNQNSEMCFSLKLKNKKLPPFL 539


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 33  NFLFYIVNFEKINIRNEFCKNSKXNELNSF*SWVPLQW 146
           NFLF +  F     +  +C +S  N  N    +  LQW
Sbjct: 236 NFLFVLSTFSICITQFYYCYDSGFNSDNLTDVYFTLQW 273


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 680 ISDTKTGSCS*PFQCHKRXCS 742
           + + K G CS P +  K+ CS
Sbjct: 143 VYNDKAGICSWPDEAKKKGCS 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,330
Number of Sequences: 336
Number of extensions: 3413
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)