Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0719
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 204 8e-53
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 166 2e-41
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 162 2e-40
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 97 2e-20
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 86 3e-17
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 85 4e-17
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 75 5e-14
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 70 2e-12
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 38 0.009
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 35 0.081
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 32 0.57
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 204 bits (497), Expect = 8e-53
Identities = 100/191 (52%), Positives = 123/191 (64%)
Frame = +2
Query: 158 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 337
L+F+A +D VT KV D+ IG G +++GLFG T PKT NF LA K +
Sbjct: 8 LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66
Query: 338 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 517
G GYK S FHRVIKNFMIQ SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67 GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126
Query: 518 KDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTXTGANDRPVKDVXISDTKT 697
K+TNGSQF+ITT+KT WLDG H FGKVLEGMDVV++IE T +D+P+ +V I+ +
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIENTRVDTHDKPLDEVKITGIGS 186
Query: 698 GSCS*PFQCHK 730
P++ K
Sbjct: 187 IPIESPYEVAK 197
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 166 bits (403), Expect = 2e-41
Identities = 84/161 (52%), Positives = 104/161 (64%)
Frame = +2
Query: 206 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 385
+V +V FD+ IG+ + G IV+ L VP T ENF L +G GYKGS FHR+I F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193
Query: 386 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 565
M Q +SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253
Query: 566 WLDGRHVVFGKVLEGMDVVQKIEMTXTGANDRPVKDVXISD 688
WLDG+HVVFG V+EG DVV+K+E + + + K V I D
Sbjct: 254 WLDGKHVVFGNVIEGFDVVRKMEAVGS-QSGKASKKVVIDD 293
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 165 bits (402), Expect = 3e-41
Identities = 92/172 (53%), Positives = 111/172 (64%), Gaps = 18/172 (10%)
Frame = +2
Query: 158 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 298
L F+AS+ + K P VT KV FD+ IG + G I IGLF +++
Sbjct: 12 LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67
Query: 299 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 463
T +F + +G GYK S FHRVI++FMIQ +SIYG++F DE
Sbjct: 68 TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127
Query: 464 NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDV 619
NFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+GM+V
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 162 bits (394), Expect = 2e-40
Identities = 86/163 (52%), Positives = 102/163 (62%)
Frame = +2
Query: 203 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 382
PK T+ FD++IG G IV+ L VPKT ENF L +G GYKGS FHRVI
Sbjct: 2 PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58
Query: 383 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT 562
FM Q +SIYG +F DENF LKH G G LSMANAG TNGSQFF+ T KT
Sbjct: 59 FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118
Query: 563 PWLDGRHVVFGKVLEGMDVVQKIEMTXTGANDRPVKDVXISDT 691
WLDG+HVVFG V +GMDVV+KIE + + + K V I+D+
Sbjct: 119 SWLDGKHVVFGSVKDGMDVVKKIEKVGSDSG-KTSKKVVIADS 160
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 97.5 bits (232), Expect = 1e-20
Identities = 49/76 (64%), Positives = 53/76 (69%)
Frame = +2
Query: 503 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTXTGANDRPVKDVXI 682
MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+K+E PVK I
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNV-KGSTPVKTCMI 59
Query: 683 SDTKTGSCS*PFQCHK 730
D+ T PF K
Sbjct: 60 DDSGTLPLDKPFNVEK 75
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 96.7 bits (230), Expect = 2e-20
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +2
Query: 434 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 610
SI+G FEDE + L+H +SMANAG +TNGSQFFIT V TPWLD +H VFG+V++G
Sbjct: 8 SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKG 67
Query: 611 MDVVQKIEMTXTG-ANDRPVKDVXI 682
MDV Q+I + T ND+P +D+ I
Sbjct: 68 MDVAQQISLVKTNPKNDQPYEDIKI 92
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +2
Query: 476 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMT 640
+H G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV+++E T
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEAT 242
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = +2
Query: 434 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 613
S+YG FEDE+F + H G + MAN G+ TNGSQF+IT PW+D ++V FG+V+EG+
Sbjct: 51 SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGL 110
Query: 614 DVVQKIEMTXTGANDRPVKDVXISD 688
+V+ +E T N+RP + ++D
Sbjct: 111 NVLDVLEGQET-FNERPKVECRVAD 134
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 497 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 631
LSMANAG TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+
Sbjct: 3 LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/85 (47%), Positives = 51/85 (60%)
Frame = +2
Query: 434 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 613
SIYG F DE F+ KH LSMAN G +TNGSQFFI HVVFG V++G
Sbjct: 31 SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGE 80
Query: 614 DVVQKIEMTXTGANDRPVKDVXISD 688
++V++IE T +RP DV +S+
Sbjct: 81 ELVRQIESLPTNEKNRPNADVKVSN 105
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 55.2 bits (127), Expect = 5e-08
Identities = 48/138 (34%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Frame = +2
Query: 251 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 430
++G I I L P +T NF LA G Y G++FHRVI FM+Q
Sbjct: 31 SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87
Query: 431 RSIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDGR-----HVVF 592
+ D H G L+MA +D+ SQFFI +LD + VF
Sbjct: 88 TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVF 144
Query: 593 GKVLEGMDVVQKIEMTXT 646
GKV++GMDVV KI T
Sbjct: 145 GKVVKGMDVVDKIAQVPT 162
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 446 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 604
E +DE L H G +SMAN G ++NGSQFFI K P LD ++ +FGK L
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 581 HVVFGKVLEGMDVVQKIEMTXTGANDRPVKDVXISD 688
HVVFG V++G ++V++IE T +RP DV +S+
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSN 38
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 34.7 bits (76), Expect = 0.081
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 251 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 379
++G I I L+GK PK NF QL EG Y + FHR++K
Sbjct: 11 SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = +2
Query: 257 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 370
G ++ LF VPKT ENF L +G G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 213 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 112
VTL PL +S+ ++N + A+VRV I SL
Sbjct: 38 VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,486,316
Number of Sequences: 59808
Number of extensions: 398250
Number of successful extensions: 681
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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