Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0718
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 37 0.015
01_06_0345 - 28588204-28588479 33 0.32
10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127... 30 1.7
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 29 3.0
11_01_0763 + 6402901-6403971,6404581-6404826 29 3.9
09_05_0019 - 20103044-20103760 29 3.9
09_06_0118 - 20964931-20966349 29 5.2
08_02_0521 - 18135036-18135152,18135662-18135943 29 5.2
02_03_0241 - 16778301-16779767 29 5.2
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 29 5.2
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 28 6.9
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 9.1
09_06_0069 + 20668500-20668622,20669270-20669521 28 9.1
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 28 9.1
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 28 9.1
06_03_0192 + 17755807-17755941,17756023-17756235,17758003-177580... 28 9.1
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 28 9.1
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 330 SEYPVYYYVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVLTQSYQFPTIQT 482
+EY YYY + N S GT + +GAAH T + ++SY PT T
Sbjct: 116 AEYANYYYSYPQTTNGSSVQQGGTNQHSGAAHQPLTSFQNSESYVGPTSNT 166
>01_06_0345 - 28588204-28588479
Length = 91
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 146 AHILQLAARESDGRGEGAEGAVPRGRPAAERRALHPRPRQTLRRLHHRVQRSQNG 310
A L + E GRG G + + R R R+ +R LHHR + Q+G
Sbjct: 3 AEALPVLEAEDGGRGGAGTGGGGGAQGGGDLRKAKERLREAIRELHHRDRHHQHG 57
>10_08_0102 +
14810293-14811345,14811989-14812108,14812745-14812792,
14812886-14813006,14814073-14814129,14815109-14815217,
14815298-14815523,14815608-14815724,14816041-14816119,
14816303-14816325,14816698-14816742,14816872-14817030
Length = 718
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 625 GTAAWRGRTPATGTPISGVSPQLFGSPCLAKLYQMAVISSTTWESG 488
G A G A G + G+ FG P L +L + A+ + T+W +G
Sbjct: 428 GKAISTGAIAAVGYYVPGIVGAKFGEPSLPRLPRFAMAAVTSWFAG 473
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 176 SDGRGEGAEGAVPRGRPAAERRALHPRPRQTLRRLHHRVQRSQNGEA 316
S R G ++PR + A+ LH R + +++H R Q + EA
Sbjct: 372 SKSRLRGGGRSLPRRKVASSDHRLHARSHKVSKKVHRRDQEQEREEA 418
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 158 QLAARESDGRGEGAEGAVPRGRPA-AERRALHPRPRQTLRR 277
+L AR DG GA GA GRP ERR RP RR
Sbjct: 229 RLGARGGDGGRLGARGAADGGRPDWRERRVRWRRPAWRERR 269
>09_05_0019 - 20103044-20103760
Length = 238
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 12 SGRAARTPCRTSSAKPRXEFFWKAPP 89
SG ++ +PC ++SA+ + + W APP
Sbjct: 9 SGESSGSPCSSASAERQHQTVWTAPP 34
>09_06_0118 - 20964931-20966349
Length = 472
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +3
Query: 57 PRXEFFWKAPPVLQNETLLDELNNDWEN--IAPIYFSLPQE--NRTAAVRELRAQYLGDG 224
PR A +L N L++ DWE I Y L N A V L+ + + D
Sbjct: 323 PRLALSSGARILLANLLALEQTTGDWEGEGIVTSYLVLMNALVNTGADVAVLQRRGVLDN 382
Query: 225 PLRNDERSTRALGRLYGDSIIGFSVHRMVKLMSRHSEY 338
L N+E + R G ++ H +L + +EY
Sbjct: 383 MLSNEEAAAAFFNRFGGCALFDPRGHHYARLFADANEY 420
>08_02_0521 - 18135036-18135152,18135662-18135943
Length = 132
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 444 RRWCRRGEQLQLVSRC 397
+RWCR G Q Q+VS C
Sbjct: 35 QRWCRLGRQQQMVSTC 50
>02_03_0241 - 16778301-16779767
Length = 488
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 431 RHHLRTHSVVPVPHHTDGQPRLPRR*RDDC 520
+HH R H + P H +PR+P + +C
Sbjct: 307 KHHGRAHFIFPTDHRARMEPRVPDKYLGNC 336
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 333 EYPVYYYVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVLTQSYQFPTIQT 482
+YP YYY N S V G + +GAA+ T + + SY PT T
Sbjct: 92 QYPNYYYNCPQSTNESS-VQQGVDQSSGAAYQPLTSFQNSGSYVGPTSNT 140
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 649 VSLSPHVPGTAAWRGRTPATGTPISGVSPQL 557
VS + +P AAWR P G P SG + QL
Sbjct: 11 VSPAARLPIRAAWRRARPTVGLPSSGRARQL 41
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 149 HILQLAAR---ESDGRGEGAEGAVPRGRPAAERRALHPRPRQTLRRLHHRVQR--SQNGE 313
H+++ + R ES + E VP+G P R + ++ L +H ++R S++G+
Sbjct: 1113 HVVRQSMRTDIESSEKVLDPELVVPKGAPTKRMRGFLEKRKRKLLSVHEDIRRLESEHGK 1172
Query: 314 AHE 322
HE
Sbjct: 1173 LHE 1175
>09_06_0069 + 20668500-20668622,20669270-20669521
Length = 124
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 170 RESDGRGEGAEGAVPRGRPAAERRALHPRPRQTLRRLHHRVQRSQNGE 313
RE +G GE E V AERR + +R + + +S GE
Sbjct: 9 REREGEGESGEDRVHGAGDLAERRWQRKEDKTAMRGDNSSIMKSTGGE 56
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 11 LRSGRAHTVPHIISQTKXRVLLESSSGT-PERDAAR*IKQRLGEHSAHILQLAARESDGR 187
+RS + + S + V ES+SG PE + A + L + SAH QL AR G
Sbjct: 293 MRSTKLEDSKDLASASGMLVKDESNSGIFPENNIAEFTESSLSKSSAHSDQLPARGDTGV 352
Query: 188 G 190
G
Sbjct: 353 G 353
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +3
Query: 282 IIGFSVHRMVKLMSRHSEYPVYYYVFS----YIGNNSY 383
++G +R+++ ++ HSEYP+ FS Y+G+ S+
Sbjct: 245 LVGILPNRIIQPLAEHSEYPIEALAFSNDRNYLGSISH 282
>06_03_0192 +
17755807-17755941,17756023-17756235,17758003-17758086,
17759280-17759948
Length = 366
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 158 QLAARESDGRGEGAEGAVPRGRPAAERRALHPRPRQTLRRLHHRVQRSQ 304
+ + E +G GEG+ G RG + ER R ++ R L R+ R Q
Sbjct: 83 EASGEEGEGEGEGSSGQRERG--SGERDDWFLRAQEIKRNLRERIFRFQ 129
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 344 HWILRVTTHELHHSVNAEPYDGVSVESAE 258
+W V +HH+VN +PY G AE
Sbjct: 191 NWKFSVVQSGVHHAVNPDPYRGAFGSDAE 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,879,452
Number of Sequences: 37544
Number of extensions: 495804
Number of successful extensions: 1961
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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