Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0718
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)                       32   0.57 
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  32   0.57 
SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      30   1.7  
SB_56819| Best HMM Match : COesterase (HMM E-Value=0)                  29   3.0  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       29   3.0  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.0  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 29   4.0  
SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)                     28   7.0  
SB_10755| Best HMM Match : Peptidase_M23 (HMM E-Value=7.2)             28   7.0  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   9.3  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   9.3  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      28   9.3  

>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 339 PVYYYVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVLTQSYQFPTIQTDSP--DSHVVDE 512
           P Y+Y   Y G   Y+    TGKP  +         L   + FP +   S   D++   +
Sbjct: 235 PTYFYEIQYRGP-LYF----TGKPVPSWQRAYHASELMFVFGFPLLSNASNPVDANFSRD 289

Query: 513 MTAIWYNFARHGDPN 557
           +  +W NFA+ GDPN
Sbjct: 290 VIQLWTNFAKTGDPN 304


>SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 948

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 517  LPSGTTSLDTAIQTTAATPRRSGSRWPEYDPAKQQYLGRGETDSLSAKTTLKTDSSSGDE 696
            LPS   ++   I  T+ TP +S ++ P     K + +G  E +S++ K     DS   ++
Sbjct: 862  LPSNPEAMVLEIDQTSGTPMQSAAKAPFLAKFKVKRMGIAELESINVKKDFPCDSDEANQ 921

Query: 697  LYPIQY 714
              P  Y
Sbjct: 922  ENPNVY 927


>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 414 GAAHHDDTIYVLTQSYQFPTIQTDSPDSHVVDEMTAIWYNFARHGDPNNCG 566
           GAAH DD  ++   S Q     +   +  +   M  +W NFA++G+P   G
Sbjct: 488 GAAHADDLRFLFRNSTQ----ASHKEELDISQAMVTLWTNFAKYGNPTPFG 534


>SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)
          Length = 493

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 649 VSLSPHVPGTAAWRGRTPATGTP-ISGVSPQLFGSPCLAKLYQMAVISSTTWESGLS 482
           VS + H  G  + +G+TP+TG P  +  +P +   PC    +  + I    ++SG S
Sbjct: 232 VSTNRHNQGRDSLQGKTPSTGIPSFAPATPTMKSPPCGDGFFDASTIPPIGYKSGQS 288


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
 Frame = +3

Query: 231 RNDERSTRALGRLYGDSIIGFSVHRMVKLMSRHSEYPVYYYVFSYIGNNSYYVDPGTGKP 410
           ++  +  + +  +  DS +    H  + L S+H   P Y + F++             KP
Sbjct: 394 KDSNKIRKKMIEMLSDSFVIAPTHASLTLHSKHGA-PTYMFEFTHRSRRHK-------KP 445

Query: 411 A--GAAHHDDTIYVLTQSYQFPTIQT-----DSPDSHVVDEMTAIWYNFARHGDP 554
           A  G  H D T Y     +  P +       D  D +V D +  ++ NFA++G+P
Sbjct: 446 AWMGVVHGDTTAY----KFGVPLLSAQQHIYDEQDRNVSDMLVTMFVNFAKYGNP 496


>SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/81 (28%), Positives = 33/81 (40%)
 Frame = +3

Query: 27  RTPCRTSSAKPRXEFFWKAPPVLQNETLLDELNNDWENIAPIYFSLPQENRTAAVRELRA 206
           R P R   AK   E  WK+ P+L      + L  +     P     P E RT+  +  RA
Sbjct: 135 REPRRLQPAKREKEK-WKSEPILSEFPDNERLPKEKVGSFPNVLQEPAEERTSGRKHRRA 193

Query: 207 QYLGDGPLRNDERSTRALGRL 269
              GD    ++ R+   +G L
Sbjct: 194 HARGDPQTVDELRAQVFMGNL 214


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
 Frame = +3

Query: 453 QSYQFPTIQTDSPDSHVVDEMTAI-------WYNFARHGDPNNCGDTPEIGVPVAGVRPR 611
           Q YQ P   T SP  H   +            YN +  GDPN  G  P  G P     P 
Sbjct: 746 QQYQHPHANTPSPTPHQQYQHPQNAGLPADNTYNPSPQGDPNQGGQQPGYGAPPTQGGPP 805

Query: 612 QAAVP 626
           QA  P
Sbjct: 806 QAQPP 810


>SB_56819| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 613

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = +3

Query: 339 PVYYYVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVL------TQSYQFPTIQTDSPDSH 500
           P Y+Y FS+   +++   P   K  G  H D+  YV        +  Q  T  TD  +  
Sbjct: 485 PTYFYHFSHW--STFSKRP---KSVGVVHFDEIPYVFGLPWKPNKGIQVATKYTDV-ERG 538

Query: 501 VVDEMTAIWYNFARHGDPNNCGDTPE 578
           +   +  +W  FA  G P   GD+P+
Sbjct: 539 LSTMVMRMWGEFAYTGSPMKAGDSPQ 564


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 652  TVSLSPHVPGTAAWRGRTPATGTPISGVSPQLFGSPCLAKLYQMAVISSTTWESGLSVCM 473
            TV+L  HV G+          G P+SG+  + F   C+ ++Y + +  +   ++G  +C 
Sbjct: 2216 TVTLRIHVTGSPKPEVDWFKDGKPVSGLPHRRFEVGCVGEVYTLVIKEARGSDTGKYLCK 2275

Query: 472  VGN 464
              N
Sbjct: 2276 AYN 2278


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 532 TSLDTAIQTTAATPRRSGSRWPEYDPAKQQYLGRG----ETDSLSAKTTLKTDSSSG 690
           T   + I  T ATP  S S W    P   Q +G       T + S  TT++T ++SG
Sbjct: 134 TKSTSPITVTKATPAWSSSAWKPNRPPVTQSIGMSTSAVTTCTSSCHTTIETSATSG 190


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 532 TSLDTAIQTTAATPRRSGSRWPEYDPAKQQYLGRG----ETDSLSAKTTLKTDSSSG 690
           T   + I  T ATP  S S W    P   Q +G       T + S  TT++T ++SG
Sbjct: 709 TKSTSPITVTKATPAWSSSAWKPNRPPVTQSIGMSTSAVTTCTSSCHTTIQTSATSG 765


>SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)
          Length = 784

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 395 RIHVIAVIADVAEHVIVHWILRVTTHELH 309
           R+H++A +A    +V VH +  VTTH +H
Sbjct: 701 RVHLLAGVAAHGVNVRVHLLAGVTTHGVH 729


>SB_10755| Best HMM Match : Peptidase_M23 (HMM E-Value=7.2)
          Length = 260

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 257 GAGGALVVPQRAVPE---VLRPQLPHRGRPILLRQAEVYGRYV 138
           GA   L+VP   +     ++ PQ+ ++GRP++L    V G YV
Sbjct: 209 GATIRLLVPSSMIQNGQTIILPQVGNQGRPVMLTPQHVGGPYV 251


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 398 HRETSWSCSPRRHHLRTHSVVPVPHHTDGQPRLPRR*R 511
           HR  S S SPRR H R+ S  P   +  G+    RR R
Sbjct: 341 HRYRSRSRSPRRKHRRSTSTSPSRRYRSGKKGHKRRSR 378


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
 Frame = -2

Query: 338 ILRVTTHELHHSVNAEPYDG-VSVESAEGAGGALVVPQRAVPEVLRPQLP---------- 192
           + R+   E+      +P +G V +ES+  A    VVP    P    P +P          
Sbjct: 356 VQRLNEGEIPAETAGQPTEGPVELESSPQATEPYVVPNIVPPHQPAPGIPPQPMKEGNSD 415

Query: 191 HRGRPILLRQAEVYGRYVLP 132
           H GRP  LRQA     YV P
Sbjct: 416 HHGRPQRLRQAPQRLTYVNP 435


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +2

Query: 119  IKQRLGEHSAHILQLAARESDGRGEGAEGAVPRGRPAAERRALHPRPRQTLRRLHHRVQR 298
            ++  +G     +L    R S GR +G   A PRG   AER  L          +   V R
Sbjct: 1512 VRVTIGGMPNKVLSQRPRISGGRRKGGSSAPPRGGGTAERLPLRQSAPSRSMAITSSVDR 1571

Query: 299  SQN 307
              N
Sbjct: 1572 PSN 1574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,929,065
Number of Sequences: 59808
Number of extensions: 517689
Number of successful extensions: 1735
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)