Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0718
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.76 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 532  TSLDTAIQTTA---ATPRRSGSRWPEYDPAKQQYLGRGETDSLS 654
            T++  A+ T A    TPR  G  WP     +Q+ + R +   LS
Sbjct: 897  TTVSLAVDTVARSNVTPRSPGRAWPGDSDIRQRPIPRSDDIRLS 940


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 279 SIIGFSVHRMVKLMSRHSEYPVYYYVFSYI 368
           SI+G  VH   +L+S H +  V  Y F  +
Sbjct: 753 SIVGTPVHMAPELLSGHYDSSVDVYAFGIL 782


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 279 SIIGFSVHRMVKLMSRHSEYPVYYYVFSYI 368
           SI+G  VH   +L+S H +  V  Y F  +
Sbjct: 791 SIVGTPVHMAPELLSGHYDSSVDVYAFGIL 820


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -2

Query: 704 GYSSSPELESVFSVVFADSESVSPRPRYCCLAGSYSGHRDPDLRGVAA 561
           GY  +     +   V   + S SP PR    A S S    P  +G AA
Sbjct: 490 GYDGAASTAVIHEPVVETNSSPSPNPRIAS-APSSSTSSSPPAKGAAA 536


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 236 VPQRAVPEVLRPQLPHRGRPI 174
           VP   V   L P+  H+GRPI
Sbjct: 530 VPGAVVRVFLGPKHDHQGRPI 550


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 NDERSTRALGRLYGDSIIGFSVHRMVKLMSRHSEYPVYYYVFS 362
           N   ST  L +LYG  ++      M+ ++S   +     Y+FS
Sbjct: 213 NITNSTPLLKKLYGGPLLRIFTKHMLDVVSGTQKKKRKIYLFS 255


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 NDERSTRALGRLYGDSIIGFSVHRMVKLMSRHSEYPVYYYVFS 362
           N   ST  L +LYG  ++      M+ ++S   +     Y+FS
Sbjct: 228 NITNSTPLLKKLYGGPLLRIFTKHMLDVVSGTQKKKRKIYLFS 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,601
Number of Sequences: 438
Number of extensions: 4921
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)