Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0718
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10113.1 68416.m01212 myb family transcription factor contain... 33 0.27
At1g18330.1 68414.m02290 myb family transcription factor contain... 33 0.27
At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot... 29 2.5
At3g21710.2 68416.m02739 expressed protein 29 3.3
At3g21710.1 68416.m02738 expressed protein 29 3.3
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 29 4.4
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 28 5.8
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 28 5.8
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 28 5.8
At3g56400.1 68416.m06272 WRKY family transcription factor DNA-bi... 28 5.8
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 28 5.8
>At3g10113.1 68416.m01212 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 336
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 128 RLGEHSAHILQLAARESDGRGEGAEGAVPRGRPAAERRALHPRPRQT 268
++ H+ A+E+D R EG+ A+ P +R+ HP PR++
Sbjct: 101 QIRSHAQKFFSKMAQEADSRSEGSVKAIVIPPPRPKRKPAHPYPRKS 147
>At1g18330.1 68414.m02290 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 346
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 128 RLGEHSAHILQLAARESDGRGEGAEGAVPRGRPAAERRALHPRPRQT 268
++ H+ A+E+D R EG+ A+ P +R+ HP PR++
Sbjct: 86 QIRSHAQKFFSKMAQEADSRSEGSVKAIVIPPPRPKRKPAHPYPRKS 132
>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
contains Pfam domains, PF00439: Bromodomain and PF00249:
Myb-like DNA-binding domain
Length = 631
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 77 ESSSGTPERDAAR*IKQ-RLGEHSAHILQLAARESD--GRGEGAEGAVPRGRPAAERRAL 247
E G+ ++ AA +++ ++G + + +A +S G+G GAE A ++
Sbjct: 509 EKKGGSKKKRAASFLRRMKVGSSDDTLKRSSAADSSTTGKGGGAEQRKNNSNKADNKKTP 568
Query: 248 HPRPRQTLRRLHHRVQRSQNGEAHE 322
P+ RQT ++ V+RS NG E
Sbjct: 569 IPKIRQTNKKA-SPVKRSNNGRNSE 592
>At3g21710.2 68416.m02739 expressed protein
Length = 211
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 544 TAIQTTAATPRRSGSRWPEYDPAKQQYLGRGETDSLSAKTTLKTDSSS 687
T++ + AAT SG +P PAK ++ GRG T + +L+ +SS
Sbjct: 74 TSLVSDAATHAFSGKSFPVNFPAKLKF-GRGRTKKICEDDSLEDTASS 120
>At3g21710.1 68416.m02738 expressed protein
Length = 175
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 544 TAIQTTAATPRRSGSRWPEYDPAKQQYLGRGETDSLSAKTTLKTDSSS 687
T++ + AAT SG +P PAK ++ GRG T + +L+ +SS
Sbjct: 74 TSLVSDAATHAFSGKSFPVNFPAKLKF-GRGRTKKICEDDSLEDTASS 120
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 243 RSTRALGRLYGDSIIGFSVHRMVKLMSRHSEYPVYYYVFSYIGNNSYYVDPGTG 404
R T L + G ++G +R+ + SE V YY S G ++Y PG G
Sbjct: 138 RKTEELSGIAGSQLVG---NRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFG 188
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 686 ELESVFSVVFADSESVSPRPRYCCLAGSYSGHRDPDLRGVAAVVW 552
E+ES+ + ES+ P++ C+AGS+S + D R +W
Sbjct: 108 EIESLALLCEIPEESIHV-PQFGCIAGSFSFRQWVDARSAVVALW 151
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 501 VVDEMTAIWYNFARHGDPNNCGDTPEIGVPVAGVRPRQAAVPGTWGD 641
V D+ T+ W N A P + D P P +A WGD
Sbjct: 745 VADDNTSAWANAAAENKPASASDQPGGWNPWGKTPASEAGTVSGWGD 791
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 698 SSSPELESVFSVVFADSESVSPRPRYCCLAGSYSGHRDPDLRGVAAVVW 552
S E+ES+ + ESV P++ C+A S+S + D R +W
Sbjct: 101 SKKQEIESIALLCEIPEESVHV-PQFGCIAASFSFRQWVDARSAVVALW 148
>At3g56400.1 68416.m06272 WRKY family transcription factor
DNA-binding protein 4 WRKY4 - Nicotiana tabacum,
EMBL:AF193771
Length = 294
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +3
Query: 351 YVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVLTQSYQFPTIQT-----DSPDSH 500
+ +YIGN++ + T K HHD+ I++ ++ ++ P++ T D+P H
Sbjct: 169 FSITYIGNHTCNTNAETPKSKTCDHHDE-IFMDSEDHKSPSLSTSMKEEDNPHRH 222
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 341 WILRVTTHELHHSVNAEPYDGV 276
W V + +HH++N +PY GV
Sbjct: 208 WKFNVVQNSVHHALNPDPYRGV 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,453,774
Number of Sequences: 28952
Number of extensions: 347577
Number of successful extensions: 1103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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