Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0715
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0256 + 13528331-13528765 163 2e-40
02_02_0566 + 11567415-11567843 160 1e-39
03_01_0098 - 773958-774144,775776-775902,776013-776088,776208-77... 35 0.079
02_05_1082 - 33976038-33978035 33 0.18
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 31 0.98
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 29 3.9
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 29 5.2
06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392 28 9.1
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 28 9.1
>06_02_0256 + 13528331-13528765
Length = 144
Score = 163 bits (395), Expect = 2e-40
Identities = 77/103 (74%), Positives = 86/103 (83%)
Frame = +1
Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
LVFKEDGQEYAQVT+MLGNGR EA+C DG KRLCHIRGK+ KKVWI GDIIL+GLRDYQ
Sbjct: 26 LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85
Query: 295 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 423
D KADVILKY DEAR LK YGE P+T+R+NE V VDG ++
Sbjct: 86 DDKADVILKYMNDEARLLKAYGELPDTLRLNEGV--DVDGPED 126
>02_02_0566 + 11567415-11567843
Length = 142
Score = 160 bits (388), Expect = 1e-39
Identities = 75/104 (72%), Positives = 81/104 (77%)
Frame = +1
Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
LVFKEDGQEYAQV +MLGNGR EA C DG KRLCHIRGK+ KKVWI GDI+L+GLRDYQ
Sbjct: 26 LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85
Query: 295 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 426
D KADVILKY DEAR LK YGE P+ VR+NE VV D D
Sbjct: 86 DDKADVILKYMNDEARLLKAYGEIPDHVRLNEGVVDEDDAAAHD 129
>03_01_0098 -
773958-774144,775776-775902,776013-776088,776208-776321
Length = 167
Score = 34.7 bits (76), Expect = 0.079
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 130 DGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 276
+G+ QV + G+ +E M G+K L K +K WI G+ +++
Sbjct: 21 EGESIMQVLALRGSNVIEVMDAKGVKSLALFPAKFQKSFWIKNGNFVVV 69
>02_05_1082 - 33976038-33978035
Length = 665
Score = 33.5 bits (73), Expect = 0.18
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 316 LKYTPDEARNLKTYGEFPETVRINETVV 399
+K+ PD+ ++LK YG++P +++ + T V
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTV 256
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 241 KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE-TVRINETVVYSVDGL 417
KV + +GD++ LR AD+ + RN ++Y E + +VRI T V+S D +
Sbjct: 244 KVEVEEGDVVGKALRKCARISADLRQELYGSSTRNCESYAEIDDSSVRI-VTQVWSFDSM 302
Query: 418 D 420
D
Sbjct: 303 D 303
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +1
Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
+V +++A + K L GR+ C + + H+R ++K VW + D +LI
Sbjct: 107 MVILHGDRKWATIAKSLP-GRIGKQCRE--RWTNHLRPDIKKDVWTEEDDRMLIEAHKTY 163
Query: 295 DAKADVILKYTPDEARN 345
+ VI + P + N
Sbjct: 164 GNRWSVIARCLPGRSEN 180
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 159 LCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFS 64
+ L ++L VF+ Q F+F V SSPP+FS
Sbjct: 1 MAPLLLILLVFMPCQTMLFTFDRVTSSPPLFS 32
>06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392
Length = 443
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 217 HIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARN 345
H+R ++K W + DI+LI K I K+ P N
Sbjct: 187 HLRPNIKKDTWSEEEDIVLIQTHKEVGNKWAEIAKHLPGRTEN 229
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 59 KEEKIGGEERTKMKLKNVSWS 121
+EE+ GGE+R K+ + N+ WS
Sbjct: 70 EEEEEGGEKRRKLYVANIPWS 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,570
Number of Sequences: 37544
Number of extensions: 282025
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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