Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0715
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164151-1|AAD47075.1|  148|Anopheles gambiae translation initia...   210   5e-56
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            29   0.20 

>AF164151-1|AAD47075.1|  148|Anopheles gambiae translation
           initiation factor 4C (1A) protein.
          Length = 148

 Score =  210 bits (512), Expect = 5e-56
 Identities = 95/108 (87%), Positives = 103/108 (95%)
 Frame = +1

Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
           L+FKED QEYAQVTKMLGNGRLEAMCFDG+KRLCHIRGKLRKKVWINQGDIILIGLRDYQ
Sbjct: 26  LIFKEDEQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 85

Query: 295 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDIEFG 438
           D+KADVILKYTPDEARNLKTYGEFPE+VRINETV +  + +D+DIEFG
Sbjct: 86  DSKADVILKYTPDEARNLKTYGEFPESVRINETVTFVENDMDDDIEFG 133


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 238 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFP 369
           K+  ++  + +++ +  Y   K   IL+YT D  R  K Y EFP
Sbjct: 757 KRYLVHAIENLIVVIVIYDKCKDVAILQYTSDRWRQQKYYDEFP 800


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,861
Number of Sequences: 2352
Number of extensions: 12677
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)