Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0715
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35680.2 68418.m04264 eukaryotic translation initiation facto...   163   1e-40
At5g35680.1 68418.m04263 eukaryotic translation initiation facto...   163   1e-40
At2g04520.1 68415.m00458 eukaryotic translation initiation facto...   162   3e-40
At2g40780.1 68415.m05031 hypothetical protein                          35   0.050
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    31   1.1  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    30   1.9  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    29   2.5  
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   7.6  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    28   7.6  

>At5g35680.2 68418.m04264 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  163 bits (396), Expect = 1e-40
 Identities = 74/105 (70%), Positives = 85/105 (80%)
 Frame = +1

Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 295 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 429
           D KADVILKY  DEAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At5g35680.1 68418.m04263 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  163 bits (396), Expect = 1e-40
 Identities = 74/105 (70%), Positives = 85/105 (80%)
 Frame = +1

Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 295 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 429
           D KADVILKY  DEAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  162 bits (393), Expect = 3e-40
 Identities = 73/104 (70%), Positives = 84/104 (80%)
 Frame = +1

Query: 115 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 294
           L+FKEDGQEYAQV +MLGNGR EAMC DG KRLCHIRGK+ KKVWI  GDI+L+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85

Query: 295 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 426
           D KADVILKY  DEAR LK YGE PE  R+NE +V  ++  D++
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDN 129


>At2g40780.1 68415.m05031 hypothetical protein 
          Length = 171

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 127 EDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 276
           E+ Q  AQV  + G+ ++E M   G   L     K R+ +WI +G  ++I
Sbjct: 20  EECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMWIRRGSFVVI 69


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 148 QVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRD 288
           ++ K LGN ++  +  DG+ ++  +    ++K W   G  I+I  RD
Sbjct: 280 EIKKRLGNQKV-FLVLDGVDKVAQVHALAKEKNWFGPGSRIIITTRD 325


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +3

Query: 570 LLVIIQSSKLICKKTQVETL*YY*YASSVHTS*NIFILKFDFSTFL 707
           + + + + KLICK +++E+L  + Y S +H +  I+ LK+   TFL
Sbjct: 775 MTIWVDTFKLICKYSELESLPRFGYMSRLHVTLCIYDLKW-LPTFL 819


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 136 QEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 276
           ++++Q+ KML  GR+   C +      H+R  ++K  W  + DIILI
Sbjct: 210 KKWSQIAKML-QGRVGKQCRERWHN--HLRPDIKKDGWTEEEDIILI 253


>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 283 RDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 426
           RDY+   AD ILK   D+    K Y    ++  +    V+ +    E+
Sbjct: 207 RDYESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQQCGEN 254


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 123 KDQLTFFSFIFVLSSPPIFSSFTFVFRHVL 34
           KD   F +F+F++S+ P FS F    R +L
Sbjct: 562 KDSQVFNTFLFIVSAFPFFSRFLQCMRRML 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,426
Number of Sequences: 28952
Number of extensions: 247817
Number of successful extensions: 635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)