Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0713
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF9F6 Cluster: hypothetical protein TTHERM_0042...    38   0.26 
UniRef50_UPI00015A6A91 Cluster: UPI00015A6A91 related cluster; n...    36   1.0  
UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_UPI000150A8EF Cluster: hypothetical protein TTHERM_0042...    35   2.4  
UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finge...    34   4.2  
UniRef50_Q7T918 Cluster: Polyprotein; n=2; Yokose virus|Rep: Pol...    33   7.4  

>UniRef50_UPI00006CF9F6 Cluster: hypothetical protein
           TTHERM_00420820; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00420820 - Tetrahymena
           thermophila SB210
          Length = 523

 Score = 37.9 bits (84), Expect = 0.26
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +3

Query: 360 KYMVIIVSVHILPPR*Y---FKTVVSCEQFEFV*YYYINRILLSFNLMFY*IYLRLIFKN 530
           KYM++ +S++++ P  +   +K     + F+   Y+Y+N ILL   L+   I ++++  N
Sbjct: 161 KYMILEMSIYLIFPNPWLTDYKVYFFVDYFQMEVYHYLNEILLLIMLLRILIMVKIVLIN 220

Query: 531 V*WYS 545
             WY+
Sbjct: 221 TQWYT 225


>UniRef50_UPI00015A6A91 Cluster: UPI00015A6A91 related cluster; n=1;
           Danio rerio|Rep: UPI00015A6A91 UniRef100 entry - Danio
           rerio
          Length = 384

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 26/98 (26%), Positives = 42/98 (42%)
 Frame = +2

Query: 362 IHGNNCFCTHSSPAMIF*DCCLM*TV*ICLILLY*SYFIVF*FNVLLNLPTFNIQERLMV 541
           +H   C C H + + I    CL  T  I   L Y S+  +F   +LL    + + + + V
Sbjct: 141 MHNFICICLHYASSCIILFACLHYTSFILSCLYYASFIFLFTLYILLFAYIYIMHQSICV 200

Query: 542 FILSICSRYLCIRYKHV*TTHFSLSVAIV*I**MKHIF 655
           F+       LC+ Y       F+L + I  +  + HIF
Sbjct: 201 FLEYASFISLCLHYASFYLHLFTLHIIIFALTYIMHIF 238


>UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 607

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
 Frame = +1

Query: 19  LLLLCCLYIAVVAAA-FPSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEK 195
           +LLL  L+I ++    F S T   E+ DV+    N+ + + + +  + DA+V V + + +
Sbjct: 68  ILLLPVLFIVMLPGLIFGSLT---EQSDVL----NSNSMISENIRASRDAIVEVLEESHE 120

Query: 196 SVIDKMADSVKSLTQ*PV*LISTPYNY----NSNIVVDELC--RWDHQILLINRNKHILD 357
            ++ ++  ++  L Q     I+ PY Y    N+N+++ + C  + D++ + +N+ K ++ 
Sbjct: 121 DILAEIHAAISRLPQGDTASINDPYTYSISVNANLLISQFCASQDDYKNINLNQLKKLIR 180

Query: 358 QN 363
           +N
Sbjct: 181 EN 182


>UniRef50_UPI000150A8EF Cluster: hypothetical protein
           TTHERM_00420830; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00420830 - Tetrahymena
           thermophila SB210
          Length = 501

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +3

Query: 360 KYMVIIVSVHILPPR*YF---KTVVSCEQFEFV*YYYINRILLSFNLMFY*IYLRLIFKN 530
           K M++ + V ++ P+ +F   K     + ++   Y+Y+N ILL F L  + +  +++  N
Sbjct: 169 KLMLLEMLVFVVFPQPWFSDIKLYFFVDYYQIQVYHYLNEILLLFMLFRFFVMAKIVLMN 228

Query: 531 V*WYS 545
             WYS
Sbjct: 229 TQWYS 233


>UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finger
           protein 709; n=1; Equus caballus|Rep: PREDICTED: similar
           to zinc finger protein 709 - Equus caballus
          Length = 1224

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 42  YRCCGSSFSIRNEEYRET*CH-GIHEECLERSREDPKRCWRCGRSRIQANRKECH 203
           YR CG  F   +  Y    CH G+  +  +   E P +C +CGR+ I  +  + H
Sbjct: 115 YRACGKVFMRHSPLYGHIRCHTGLKPDEYQTDGEKPYKCKKCGRTFIYHHTFQRH 169


>UniRef50_Q7T918 Cluster: Polyprotein; n=2; Yokose virus|Rep:
           Polyprotein - Yokose virus
          Length = 3425

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 25  LLCCLYIAVVAAAFPSETRNIEKRDVMESMK-NAWNEVV 138
           ++ C+ + +VA A+ +   N+EKRD ++S   ++W  VV
Sbjct: 282 IIICILLLLVAPAYSTHCTNVEKRDFLQSTSGSSWTTVV 320


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,285,410
Number of Sequences: 1657284
Number of extensions: 12716999
Number of successful extensions: 27832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27824
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)