BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0713 (740 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 28 1.6 SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 2.8 SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 2.8 SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 8.6 SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 8.6 SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 8.6 >SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 27.9 bits (59), Expect = 1.6 Identities = 11/42 (26%), Positives = 24/42 (57%) Frame = +1 Query: 88 EKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKM 213 ++RD+++++ N W V L AGD + P + +++K+ Sbjct: 38 QRRDILKTINNFW---VVVLEAAGDEISQYITPEDSVLLEKL 76 >SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 309 Score = 27.1 bits (57), Expect = 2.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +2 Query: 347 IF*IKIHGNNCFCTHSSP 400 ++ IK H +NCFC SP Sbjct: 187 VYDIKAHNSNCFCIEFSP 204 >SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1316 Score = 27.1 bits (57), Expect = 2.8 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 515 FNIQERLMVFILSICSRYLCIRYKHV 592 FN + L +F +SIC L +RY+++ Sbjct: 62 FNFKSLLFLFFVSICVVILVVRYRYL 87 >SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosaccharomyces pombe|chr 1|||Manual Length = 222 Score = 25.4 bits (53), Expect = 8.6 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Frame = +1 Query: 82 NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVK---SLTQ*PV* 252 NIE++ N E ++ + +A+ + + + +D++ D ++ ++++ Sbjct: 83 NIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEIST 142 Query: 253 LISTPYNYNSNIVVDEL 303 +ISTP N+ I DEL Sbjct: 143 MISTPVGLNAEIDEDEL 159 >SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 537 Score = 25.4 bits (53), Expect = 8.6 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +1 Query: 10 DFRLLLLCCLYIAV-VAAAFP-SETRNIEKRDVMESMKNAWN 129 D ++LL + +A V F ++TRN + +D M ++K WN Sbjct: 330 DAEVMLLATILVAANVCYGFDDAQTRNSKYKDSMFTVKTNWN 371 >SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1158 Score = 25.4 bits (53), Expect = 8.6 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 17 DCYFSVVFISLLWQQLFHQKRGI*R 91 D YFS + I+ LWQ +QK+ I R Sbjct: 648 DGYFSHLVITKLWQVYSYQKKDISR 672 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,879,431 Number of Sequences: 5004 Number of extensions: 60137 Number of successful extensions: 126 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 351258950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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