Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0713
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC024770-9|AAF59487.2|  131|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical
           protein K03E6.7 protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 82  NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSV 201
           NI   D +  M  + +E++K +  A D V H+ KP  KSV
Sbjct: 387 NIGDDDTVSKMLMSHSELIKDIELATDRVGHILKPNIKSV 426


>AC024770-9|AAF59487.2|  131|Caenorhabditis elegans Hypothetical
           protein Y39H10A.1 protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 88  EKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADS 222
           ++RD  E +KNA    + T+  AG+A V       K   D + D+
Sbjct: 67  KRRDASEDIKNAGRNAIGTVDSAGNAAVDKAGELVKGGTDHIKDA 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,771
Number of Sequences: 27780
Number of extensions: 326865
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)