Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0712
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)               107   6e-24
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)               105   5e-23
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      91   8e-19
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)                   88   7e-18
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      83   2e-16
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      79   3e-15
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_47222| Best HMM Match : UQ_con (HMM E-Value=5)                      54   8e-08
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)                52   3e-07
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)                  48   1e-05
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   3e-04
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     32   0.39 
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 29   2.7  
SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score =  107 bits (258), Expect = 6e-24
 Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
 Frame = +1

Query: 343 YPMSAPKVRFITKIYHPNIDRLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNP 510
           YP   PKVRF+T IYHPNID  GRICLD LK      W PAL I +VL +I  L++ PNP
Sbjct: 25  YPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNP 84

Query: 511 DDPLANDVAELWKVNESEAIXNAKEWTRRYAMD 609
           DDPL  +++  +K N+++ +  AKEWT ++AMD
Sbjct: 85  DDPLMAEISNEFKYNKAQFLEKAKEWTLKFAMD 117


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score =  105 bits (251), Expect = 5e-23
 Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
 Frame = +1

Query: 346 PMSAPKVRFITKIYHPNIDRLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPD 513
           P   PKVRF+T IYHPNID  GRICLD LK      W PAL I +VL +I  L++ PNPD
Sbjct: 40  PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPD 99

Query: 514 DPLANDVAELWKVNESEAIXNAKEWTRRYAMD 609
           DPL  +++  +K N+++ +  AKEWT ++AMD
Sbjct: 100 DPLMAEISNEFKYNKAQFLEKAKEWTLKFAMD 131


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 55/143 (38%), Positives = 69/143 (48%)
 Frame = +1

Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
           +RI +E   +  +P P  SA P   +   ++  + GP  S               DYP  
Sbjct: 98  KRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFK 157

Query: 355 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 534
            PK               G +CLDILKD WSPAL I  VLLSI +LL+  NP DPL   +
Sbjct: 158 PPK---------------GMVCLDILKDSWSPALTISKVLLSICSLLTDCNPADPLVGSI 202

Query: 535 AELWKVNESEAIXNAKEWTRRYA 603
           A L+  N SE    AKEWT+RYA
Sbjct: 203 AALYVQNRSEHDATAKEWTKRYA 225


>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
          Length = 48

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 41/44 (93%), Positives = 42/44 (95%)
 Frame = +1

Query: 439 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAI 570
           KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE WKVNE +AI
Sbjct: 2   KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKVNEVQAI 45


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
 Frame = +1

Query: 244 ETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGRICL 423
           E+N  Y+  ++  PE                 +YP   PK+ F TKIYHPNID  G++CL
Sbjct: 20  ESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCL 78

Query: 424 DILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIXNAKEWTRRY 600
            I+  + W PA +   V+ ++ AL+  P P+ PL  D+AE +  ++ + + NA++ T++Y
Sbjct: 79  PIISPENWKPATKTEQVIQALLALVHDPEPEHPLRADLAEEYSKDKKKFMKNAEDCTKKY 138


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
 Frame = +1

Query: 160  MAALPRRIIKETQRLMQEPVPGISA-VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXX 336
            +++  R +  E ++L +EPV G +  VP E+N   + V + GP  +              
Sbjct: 1122 LSSAVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFP 1181

Query: 337  XDYPMSAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLL 477
             DYP S P  RF+TK++HPNI   G +C+ IL              ++W+P   +RT+LL
Sbjct: 1182 HDYPYSPPTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 1241

Query: 478  SIQALLSAPNPDDPLANDVAELWK 549
            S+ +LL+ PN   P   D + +++
Sbjct: 1242 SVISLLNEPNTFSPANVDASVMFR 1265


>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = +1

Query: 370 FITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWK 549
           F+TKI+HPN+ + G IC++ LK  W P L I+ VLL+++ LL  PNP+  L  +  +L  
Sbjct: 147 FLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLL 206

Query: 550 VNESEAIXNAKEWTRRYA 603
               +    AK +T  +A
Sbjct: 207 ERYDDYSKRAKMFTEIHA 224


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
 Frame = +1

Query: 190 ETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKV 366
           ET+ L ++PV G SA   +    Y + ++V GP  +               +YP   P +
Sbjct: 341 ETE-LQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTL 399

Query: 367 RFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 507
            FI+ I+HPN+ + G +C+ IL              ++W P   + T++LS+ ++L+ PN
Sbjct: 400 TFISDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPN 459

Query: 508 PDDPLANDVA 537
            + P   D A
Sbjct: 460 DESPANVDAA 469


>SB_47222| Best HMM Match : UQ_con (HMM E-Value=5)
          Length = 46

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = +1

Query: 472 LLSIQALLSAPNPDDPLANDVAELWKVNESEAIXNAKEWTRRYAM 606
           LLSI +LL  PNPDDPL  D+A ++K ++ +    AKEWT++YAM
Sbjct: 2   LLSICSLLCDPNPDDPLVPDIARIYKTDKPKYNELAKEWTKKYAM 46


>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
          Length = 243

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +1

Query: 340 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 519
           DYP  AP +   TKIYHPN+D    +C+ +L D W  +  +  ++  +  L   PN +DP
Sbjct: 63  DYPNVAPSINCKTKIYHPNMDGYDGVCMSLL-DDWQASNDLEDLVQGLLFLFYNPNLEDP 121

Query: 520 LAN 528
           L++
Sbjct: 122 LSS 124


>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
          Length = 215

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 340 DYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 516
           DYP + P  R +  IYHPN+D   G +CL +L D W+ +  +  ++  +  L   PN +D
Sbjct: 63  DYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLL-DDWNESNDLEDLVQGLLFLFYNPNLED 121

Query: 517 PLA 525
           PL+
Sbjct: 122 PLS 124


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +1

Query: 235 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNI 399
           VP + +    H ++TGP D+               DYP+  P+V+ +T       ++PN+
Sbjct: 4   VPDKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNL 63

Query: 400 DRLGRICLDILKD 438
            R G++CL I+ D
Sbjct: 64  YRNGKVCLSIIGD 76


>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +1

Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
           +R+++E + L +       A P E N   +H  V GP D+               +YPM 
Sbjct: 13  KRLMREAKEL-RNATELYHAQPLEDNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMK 71

Query: 355 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSI 483
            P +  +T      I +  +ICL +     + W P+  IRTVL++I
Sbjct: 72  PPSIMLLTPNGRFEIGK--KICLSMSAHHPETWQPSWSIRTVLMAI 115


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 394 NIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNE 558
           NID   +   D +++KWS +L  R   L  Q   S  NPD  + +   E W +++
Sbjct: 547 NIDTPQKGLQDSMREKWSNSLMKRREYLDDQIHSSMNNPDKSVVDKERESWLIDQ 601


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +1

Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
           +RI +E   +  +P P  SA P   +   ++  + GP  S               DYP  
Sbjct: 138 KRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFK 197

Query: 355 APK 363
            PK
Sbjct: 198 PPK 200


>SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 230 AQYLARQTP-VTSTLS*RAQRTRLSKEDCSN*NYFYRRITPCRH 358
           AQ  AR +P +T T   +  RTR SK + +N  +FY ++    H
Sbjct: 17  AQKKARSSPQLTQTGEAKRNRTRKSKHNRANDTWFYTQLVKLSH 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,763,194
Number of Sequences: 59808
Number of extensions: 408949
Number of successful extensions: 1131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)