Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0712
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 230 8e-61
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 126 1e-29
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 126 1e-29
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 108 4e-24
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 108 4e-24
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 92 4e-19
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 85 6e-17
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 84 1e-16
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 81 1e-15
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 80 1e-15
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 71 1e-12
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 67 1e-11
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 66 2e-11
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 66 2e-11
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 63 2e-10
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 63 2e-10
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 56 2e-08
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 53 2e-07
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 49 4e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 3e-05
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 41 7e-04
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 41 0.001
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 28 5.6
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 27 9.8
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 230 bits (562), Expect = 8e-61
Identities = 106/145 (73%), Positives = 119/145 (82%)
Frame = +1
Query: 169 LPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYP 348
LPRRIIKETQRL+ +PVPGISA P E+NARYFHV++ GP+DS +YP
Sbjct: 5 LPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 64
Query: 349 MSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 528
M+APKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP+DPLA
Sbjct: 65 MAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLAT 124
Query: 529 DVAELWKVNESEAIXNAKEWTRRYA 603
DVAE WK NE+EAI AK+WT YA
Sbjct: 125 DVAEQWKTNEAEAIKTAKQWTMNYA 149
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 126 bits (305), Expect = 1e-29
Identities = 63/144 (43%), Positives = 84/144 (58%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 355 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 534
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 535 AELWKVNESEAIXNAKEWTRRYAM 606
A ++K + A+EWT++YAM
Sbjct: 124 ARIYKTDRERYNQLAREWTQKYAM 147
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 126 bits (305), Expect = 1e-29
Identities = 63/144 (43%), Positives = 84/144 (58%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 355 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 534
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 535 AELWKVNESEAIXNAKEWTRRYAM 606
A ++K + A+EWT++YAM
Sbjct: 124 ARIYKTDRERYNQLAREWTQKYAM 147
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 108 bits (259), Expect = 4e-24
Identities = 46/130 (35%), Positives = 78/130 (60%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 355 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 534
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 535 AELWKVNESE 564
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 108 bits (259), Expect = 4e-24
Identities = 46/130 (35%), Positives = 78/130 (60%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 355 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 534
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 535 AELWKVNESE 564
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 91.9 bits (218), Expect = 4e-19
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Frame = +1
Query: 274 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSP 450
+ GP D+ YP S P V+F TKI+HPN+ + G ICLDILKD+W+
Sbjct: 43 IRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAA 102
Query: 451 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIXNAKEWTRRYA 603
+L +RTVLLSIQAL+ P P DP VA+ + + A+ WT ++A
Sbjct: 103 SLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFA 153
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 84.6 bits (200), Expect = 6e-17
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 351
+R++ E + L P GI A P E N + ++TGPE++ DYP+
Sbjct: 7 KRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPL 66
Query: 352 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 492
S PK+RF I+HPNI GR+C+ IL ++WSP I +LLS+ ++
Sbjct: 67 SPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSM 126
Query: 493 LSAPNPDDPLANDVAELWKVNESE 564
L+ PN + P A++W+ + ++
Sbjct: 127 LAEPNDESPANVSAAKMWREDRAQ 150
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 351
RR+ KE L V V ETN + V++ P+ DYP
Sbjct: 5 RRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPF 63
Query: 352 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 528
PKV F TKIYHPN+D G+ CL I+ + W PA + V++++ +L++ P P P+
Sbjct: 64 KPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRA 123
Query: 529 DVAELWKVNESEAIXNAKEWTRRYA 603
DVAE ++ + + + A+E TR++A
Sbjct: 124 DVAEEFQKDHKKFMKTAEEHTRKHA 148
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 80.6 bits (190), Expect = 1e-15
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Frame = +1
Query: 187 KETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 363
K+ + + PV G SA + N Y + V+V GP D+ DYP PK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 364 VRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAP 504
++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++L+ P
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 505 NPDDPLANDVAELWKVNESEAIXNAKEWTRR 597
N + P D A++ + N +E + RR
Sbjct: 130 NFESPANVDAAKMQRENYAEFKKKVAQCVRR 160
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 80.2 bits (189), Expect = 1e-15
Identities = 57/170 (33%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Frame = +1
Query: 145 DRIFKMA-ALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXX 321
D++ +A A R KE GI E N + GPE +
Sbjct: 13 DKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEI 72
Query: 322 XXXXXXDYPMSAPKV---------------RFITKIYHPNID-RLGRICLDILKDKWSPA 453
YP PKV +F+T+I+HPNI + G ICLDILKDKW+ +
Sbjct: 73 KVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTAS 132
Query: 454 LQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIXNAKEWTRRYA 603
L +RTVLLS+QA+L +P P DP VA+ + N A WT +A
Sbjct: 133 LTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
R + E + L +PV G + +E N + V + GP + +YP S
Sbjct: 13 RALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYS 72
Query: 355 APKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALL 495
P ++F TK++HPN+ G +C+ IL ++W+P +RT+LLS+ +LL
Sbjct: 73 PPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLL 132
Query: 496 SAPNPDDPLANDVAELWK 549
+ PN P D + +++
Sbjct: 133 NEPNTSSPANVDASVMYR 150
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +1
Query: 262 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKD 438
F V GP+D+ YP +P + F+ KI+HPNID G +CLD++
Sbjct: 35 FIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQ 94
Query: 439 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAELWKVNESEAIXNAKEWTRRYAMDN 612
W+ + + + LL+ PN DPL + A L+ E +E+ R+A ++
Sbjct: 95 AWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEYRRTCREYVMRFASEH 153
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +1
Query: 340 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 513
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 514 DPLANDVAELWKVNESEAIXNAKEWTRRYAMD 609
DP + +++ N +E K+ +YA +
Sbjct: 127 DPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +1
Query: 340 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 513
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 514 DPLANDVAELWKVNESEAIXNAKEWTRRYAMD 609
DP + +++ N +E K+ +YA +
Sbjct: 127 DPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 63.3 bits (147), Expect = 2e-10
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Frame = +1
Query: 166 ALPRRIIKETQRLMQEPVPGISAVPSETN--ARYFHVIVTGPEDSXXXXXXXXXXXXXXX 339
A RR++KE +L E G+ + T+ + + + V G E +
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 340 DYPMSAPKVRFITKIY--HPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 501
YP ++P+V F+ + HP+I G ICL IL D W+PAL +++V LSI ++LS+
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSS 119
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 62.9 bits (146), Expect = 2e-10
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Frame = +1
Query: 172 PRRIIKET-QRLMQEP-VPGISAVPSETNA-RYFHVIVTGPEDSXXXXXXXXXXXXXXXD 342
P ++I T Q L +EP V + V + + I+ G E++
Sbjct: 348 PMKVISVTPQNLPEEPNVSETNIVTVKFRLPKGIQGIIKGVEETPYEGGIFELDIKIGES 407
Query: 343 YPMSAPKVRFITKIYHPNIDRL-GRICL-DILKDKWSPALQIRTVLLSIQALLSAPNPDD 516
YP AP V+FITKI+HP++ G ICL D+ W ++ I VL+ IQ+ +S N +
Sbjct: 408 YPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTIYKVLIVIQSWMSNFNEKE 467
Query: 517 PLANDVAELWKVNESEAIXNAKEWTRRYA 603
P+ ++ E N A+ WT+R+A
Sbjct: 468 PIDVEILEQATNNREVFEKTAEFWTKRFA 496
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
RR+ K+ +LMQ+PV GI A+P+E N +H + G D+ ++P S
Sbjct: 22 RRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFPWS 81
Query: 355 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 525
P + IT + R+CL D + W+P + +L+ + + + N + P A
Sbjct: 82 PPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM---NENSPAA 136
Query: 526 NDVA 537
+A
Sbjct: 137 GSIA 140
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
+R+ K+ QRL++EPVP + A P ETN + I+ G + D+P
Sbjct: 11 QRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFK 70
Query: 355 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 510
P + +T + R+CL D D W+PA + T++ + + ++ P
Sbjct: 71 PPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +1
Query: 340 DYPMSAPKVRFITKIYHPNIDRLG-RICLD-ILKDKWSPALQIRTVLLSIQALLSAPNPD 513
+YP P ++F +YHPN+D + +C +L++ W P + VLL++ LL+ P+
Sbjct: 71 EYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLS 130
Query: 514 DPLANDVAELWKVNESEAIXNAKEWTRRY 600
P+ D A + N+ E + + E +++
Sbjct: 131 RPVNIDAAHDYIHNKVEFVKKSTELAKKW 159
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Frame = +1
Query: 235 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGR 414
VPS + + VT P++ +Y P V+ +TK++HPNI+ G
Sbjct: 52 VPSTSCLHELELTVT-PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGS 110
Query: 415 ICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLANDVAELWKVNESEAIX 573
ICL IL+ W P + V+ + +L + + +D L A++W N
Sbjct: 111 ICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNH 170
Query: 574 NAKEWTRRY 600
+E+ RY
Sbjct: 171 RVREYISRY 179
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Frame = +1
Query: 268 VIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNIDRLGRICLDIL 432
V+++GP+D+ YP S PK F+T ++PN+ G+ICL IL
Sbjct: 447 VLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSIL 506
Query: 433 -------KDKWSPALQIRTVLLSIQALL 495
++KW+P + VL+SIQ ++
Sbjct: 507 GTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 41.1 bits (92), Expect = 7e-04
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +1
Query: 175 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 354
RR++KE L Q P A P E N +H + G + DYPM
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 355 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSIQALL 495
P + +T +++ ++CL I + W P+ IRT LL++ L
Sbjct: 72 PPNLILLTPNGRFELNK--KVCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 343 YPMSAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDP 519
+P+ P F T ++HPN+D G I L +L ++ WS ++ +L I LL+ P+
Sbjct: 97 WPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPDLTQ- 155
Query: 520 LANDVAELWKVNESEAIXNAKEWTRRYA 603
AN E W E++ N + R YA
Sbjct: 156 AAN--IEAWMEYENQR-ENYEAKARAYA 180
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.1 bits (67), Expect = 0.79
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 184 IKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA-P 360
+ ++ L + V G ET FHVI+ GP S S P
Sbjct: 38 MNRSRHLQGKKVNGCIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIP 97
Query: 361 KVRFITKIYHPNIDRLG 411
+V F T I+HPN+ + G
Sbjct: 98 RVCFHTFIFHPNLGKYG 114
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 340 DYPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQ 486
+YP P VRF TK++ +++ + L L++ WS + I+TVL I+
Sbjct: 67 NYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIR 118
>Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical
protein C08H9.4b protein.
Length = 465
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 511 DDPLANDVAELWKVNESEAIXNAKEW 588
D PL +D +WKVNES + A W
Sbjct: 346 DLPLRDDSDNIWKVNESGRLAVALRW 371
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 487 ALLSAPNPDDPLAN-DVAELWKVNESEAIXNAKEWT 591
AL+ NP N DVAE+ + N S I N EWT
Sbjct: 286 ALVELKNPTVNAENEDVAEVKERNRSIVIHNVPEWT 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,037
Number of Sequences: 27780
Number of extensions: 291765
Number of successful extensions: 687
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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