Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0710
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    27   2.0  
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    27   2.0  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   7.9  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 171 WANNHPTSGPSKSLVTFTRPLLLMSKPRMNPAIAFGGKSPR 49
           + + H  +   K+L+T+ R LL+    RM P   FGG   R
Sbjct: 93  FVDEHSKAELKKALITYDRTLLVADPRRMEPK-KFGGHGAR 132


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 171 WANNHPTSGPSKSLVTFTRPLLLMSKPRMNPAIAFGGKSPR 49
           + + H  +   K+L+T+ R LL+    RM P   FGG   R
Sbjct: 93  FVDEHSKAELKKALITYDRTLLVADPRRMEPK-KFGGHGAR 132


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 308 KIKNLQFSQTKRVTKII 358
           K+K+L+F QTKR TK++
Sbjct: 328 KLKHLKFIQTKRGTKLL 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,749
Number of Sequences: 5004
Number of extensions: 51469
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)