Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0710
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0324 + 33133081-33133260,33133381-33133481,33133665-331337...    28   8.2  

>03_06_0324 +
           33133081-33133260,33133381-33133481,33133665-33133797,
           33133936-33134027,33134309-33134408,33134505-33134577,
           33134659-33134779,33135418-33135537,33136089-33136179,
           33136288-33136305
          Length = 342

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 180 CCVWANNHPTSGPSKSLVTFTRPLLLMSKPRMN 82
           C  WA      GP++ LV + R     S PR++
Sbjct: 12  CAAWARRRGGGGPARLLVVYGRASTASSPPRID 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,425
Number of Sequences: 37544
Number of extensions: 284299
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)