Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0710
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein p...    30   6.9  
BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair cross-c...    30   6.9  
AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair cross-c...    30   6.9  
AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair cross-c...    30   6.9  

>L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein
           protein.
          Length = 1493

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 88  AGLGHEQ*RTGECYQRFRGSGCRVIVCPDTAI 183
           AGL + + RT     RF G G  VIVCP T +
Sbjct: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVM 578


>BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 1493

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 88  AGLGHEQ*RTGECYQRFRGSGCRVIVCPDTAI 183
           AGL + + RT     RF G G  VIVCP T +
Sbjct: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVM 578


>AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 1493

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 88  AGLGHEQ*RTGECYQRFRGSGCRVIVCPDTAI 183
           AGL + + RT     RF G G  VIVCP T +
Sbjct: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVM 578


>AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair
           cross-complementing rodent repairnt regulator of
           chromatin, sub protein.
          Length = 1493

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 88  AGLGHEQ*RTGECYQRFRGSGCRVIVCPDTAI 183
           AGL + + RT     RF G G  VIVCP T +
Sbjct: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVM 578


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,847,023
Number of Sequences: 237096
Number of extensions: 1727808
Number of successful extensions: 6734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6734
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)