Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0710
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    29   2.4  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    29   2.4  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    29   2.4  
U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    28   5.6  
AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical ...    28   7.4  

>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 540  ILCMSRIKKICLVLFSXXXXXXXXXXKIQTFSWYEKKTKVR--VTELIINFKVYYYHFRL 367
            +LC++ I  IC +LF+           +  F W  ++ ++   +T L IN+ V+++ F+L
Sbjct: 1285 LLCLTVISAICNILFTLECLLKMIAFTLSGF-WQSRRNRIDFIITILGINWIVFHFLFQL 1343


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 540  ILCMSRIKKICLVLFSXXXXXXXXXXKIQTFSWYEKKTKVR--VTELIINFKVYYYHFRL 367
            +LC++ I  IC +LF+           +  F W  ++ ++   +T L IN+ V+++ F+L
Sbjct: 1263 LLCLTVISAICNILFTLECLLKMIAFTLSGF-WQSRRNRIDFIITILGINWIVFHFLFQL 1321


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 540  ILCMSRIKKICLVLFSXXXXXXXXXXKIQTFSWYEKKTKVR--VTELIINFKVYYYHFRL 367
            +LC++ I  IC +LF+           +  F W  ++ ++   +T L IN+ V+++ F+L
Sbjct: 1285 LLCLTVISAICNILFTLECLLKMIAFTLSGF-WQSRRNRIDFIITILGINWIVFHFLFQL 1343


>U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical
           protein F43H9.3 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 459 IQTFSWYEKKTKVRVTELIINFKVYYYHF 373
           +  FSW     K+ ++ELII F  YY HF
Sbjct: 291 LSDFSW-TSHNKMAISELIIRFVDYYNHF 318


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 422 TLVFFSYHENVWIFFHFLI*NSFLENKTKHIFFILLIQSMFNIPLNKTAKINLG 583
           TLVF+ +   VW+F   L     LEN+  H+ + +L+   + +  +  A IN+G
Sbjct: 233 TLVFYIF---VWVFLRVL--PVMLENR--HVEWFILVPFFYTVNCSSAAIINIG 279


>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 396 FKVYY-YHFRLF*LIILVTRLVCEN--CKFLILNLYDY 292
           +K+YY Y F L   IIL    VC    C + +LN  DY
Sbjct: 466 YKIYYVYGFMLLVTIILSIVTVCVTIVCSYFLLNAEDY 503


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -1

Query: 631 LNRYISLLK*SDISGLAKVYFSSFV*RYIKHTLYEQNKENMF-----SFIF*KRILYQKM 467
           L R+ +  +  +I  +      S + RY+KH + E++ +N+       F F   IL  + 
Sbjct: 148 LPRFCAQAERPNICNVCNNQAPSTIHRYVKHVISEKHLKNLTGVSPQEFNFWVNILTLET 207

Query: 466 KKNPDILVV 440
           KK P+IL +
Sbjct: 208 KKQPNILAI 216


>AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 473 LI*NSFLENKTKHIF--FILLIQSMFNIPLNKTAKINL 580
           LI  S L NKTKH    F +   S F+I LN++ +  +
Sbjct: 26  LICTSLLSNKTKHFIREFCIFKASRFSIELNQSVQFKM 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,524
Number of Sequences: 27780
Number of extensions: 285975
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)