BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0710 (700 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 29 2.4 DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 29 2.4 AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 29 2.4 U50307-4|AAA92305.1| 413|Caenorhabditis elegans Hypothetical pr... 29 3.2 U50300-1|AAC48108.2| 349|Caenorhabditis elegans Serpentine rece... 28 5.6 AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical ... 28 5.6 Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 28 7.4 AC024804-8|AAF60745.1| 319|Caenorhabditis elegans Hypothetical ... 28 7.4 >U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 2 protein. Length = 1785 Score = 29.5 bits (63), Expect = 2.4 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -2 Query: 540 ILCMSRIKKICLVLFSXXXXXXXXXXKIQTFSWYEKKTKVR--VTELIINFKVYYYHFRL 367 +LC++ I IC +LF+ + F W ++ ++ +T L IN+ V+++ F+L Sbjct: 1285 LLCLTVISAICNILFTLECLLKMIAFTLSGF-WQSRRNRIDFIITILGINWIVFHFLFQL 1343 >DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1763 Score = 29.5 bits (63), Expect = 2.4 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -2 Query: 540 ILCMSRIKKICLVLFSXXXXXXXXXXKIQTFSWYEKKTKVR--VTELIINFKVYYYHFRL 367 +LC++ I IC +LF+ + F W ++ ++ +T L IN+ V+++ F+L Sbjct: 1263 LLCLTVISAICNILFTLECLLKMIAFTLSGF-WQSRRNRIDFIITILGINWIVFHFLFQL 1321 >AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1785 Score = 29.5 bits (63), Expect = 2.4 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -2 Query: 540 ILCMSRIKKICLVLFSXXXXXXXXXXKIQTFSWYEKKTKVR--VTELIINFKVYYYHFRL 367 +LC++ I IC +LF+ + F W ++ ++ +T L IN+ V+++ F+L Sbjct: 1285 LLCLTVISAICNILFTLECLLKMIAFTLSGF-WQSRRNRIDFIITILGINWIVFHFLFQL 1343 >U50307-4|AAA92305.1| 413|Caenorhabditis elegans Hypothetical protein F43H9.3 protein. Length = 413 Score = 29.1 bits (62), Expect = 3.2 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 459 IQTFSWYEKKTKVRVTELIINFKVYYYHF 373 + FSW K+ ++ELII F YY HF Sbjct: 291 LSDFSW-TSHNKMAISELIIRFVDYYNHF 318 >U50300-1|AAC48108.2| 349|Caenorhabditis elegans Serpentine receptor, class x protein3 protein. Length = 349 Score = 28.3 bits (60), Expect = 5.6 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +2 Query: 422 TLVFFSYHENVWIFFHFLI*NSFLENKTKHIFFILLIQSMFNIPLNKTAKINLG 583 TLVF+ + VW+F L LEN+ H+ + +L+ + + + A IN+G Sbjct: 233 TLVFYIF---VWVFLRVL--PVMLENR--HVEWFILVPFFYTVNCSSAAIINIG 279 >AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical protein Y41D4A.4 protein. Length = 580 Score = 28.3 bits (60), Expect = 5.6 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = -2 Query: 396 FKVYY-YHFRLF*LIILVTRLVCEN--CKFLILNLYDY 292 +K+YY Y F L IIL VC C + +LN DY Sbjct: 466 YKIYYVYGFMLLVTIILSIVTVCVTIVCSYFLLNAEDY 503 >Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical protein F27D4.6 protein. Length = 1008 Score = 27.9 bits (59), Expect = 7.4 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Frame = -1 Query: 631 LNRYISLLK*SDISGLAKVYFSSFV*RYIKHTLYEQNKENMF-----SFIF*KRILYQKM 467 L R+ + + +I + S + RY+KH + E++ +N+ F F IL + Sbjct: 148 LPRFCAQAERPNICNVCNNQAPSTIHRYVKHVISEKHLKNLTGVSPQEFNFWVNILTLET 207 Query: 466 KKNPDILVV 440 KK P+IL + Sbjct: 208 KKQPNILAI 216 >AC024804-8|AAF60745.1| 319|Caenorhabditis elegans Hypothetical protein Y51H7BR.1 protein. Length = 319 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +2 Query: 473 LI*NSFLENKTKHIF--FILLIQSMFNIPLNKTAKINL 580 LI S L NKTKH F + S F+I LN++ + + Sbjct: 26 LICTSLLSNKTKHFIREFCIFKASRFSIELNQSVQFKM 63 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,674,524 Number of Sequences: 27780 Number of extensions: 285975 Number of successful extensions: 636 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 620 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 636 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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