Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0710
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    32   0.42 
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ...    29   3.0  

>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 149 PDPRNLW*-HSPVLYCSCPSPA*ILQ*RLEVRAHGSTCRWTR 27
           P  +N W  H  ++ CS    A I   RL  R+HG +CRWTR
Sbjct: 476 PKFKNSWFCHDNIVTCSRDGSAIIWIPRLR-RSHGKSCRWTR 516


>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1934

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119  VNVTKDFEGPDVG*LFAQTQQFKISPRAVVESF-TKKKAVFRTFKNQKDSK 268
            V++ KDF+G +   LF + +       AV+ES+ T KK ++   +++ D +
Sbjct: 873  VDMAKDFKGKEDAELFRKIKSDSYMYYAVIESYETLKKIIYALLEDEADRR 923


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,631
Number of Sequences: 28952
Number of extensions: 252634
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)