Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0708
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.0  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    26   5.0  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   8.7  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   8.7  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 241 QPLVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMRRWLAEV 110
           Q   PS R +V PQ PG++ +P SL    + ++        +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 278 SWPGSELSPMSITTYGYPF 334
           SW G ELSP   T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
 Frame = -3

Query: 478 HTNSHSLRNTRTS*KHT-----LTHVTHSQHFNTISNISH---YRFLGRLHGDRHSERIP 323
           +TNS+++ ++R S KHT       H   +   N+++++ H     F+    G + +E IP
Sbjct: 228 YTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLLHASNQTFMAPASGLQSTEEIP 287

Query: 322 VCS-DGH-RGQ 296
             S  GH RG+
Sbjct: 288 QFSKTGHSRGR 298


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 307 VHHYIRVSV--LNADHHVVVLKN 369
           VHH +R+S+  LN D HV  L+N
Sbjct: 292 VHHKLRLSISLLNPDGHVSELRN 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,705
Number of Sequences: 5004
Number of extensions: 72568
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)