Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0708
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 37 0.015
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 36 0.035
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 36 0.046
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 35 0.061
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.33
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.3
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.7
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 30 1.7
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 3.0
SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) 29 3.0
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 4.0
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 5.3
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4) 29 5.3
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 28 7.0
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 7.0
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) 28 9.3
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Frame = +3
Query: 402 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFSACTHEC----VISLLYAVIWYKS 560
CC C V C S V Y RV C VCY V+F +C C V+ V+ Y
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVACCSCRVVCYSCRVVCYSC 230
Query: 561 LXCC**CK 584
C C+
Sbjct: 231 RVACCSCR 238
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = +3
Query: 339 CRSPCSRPKKR*CEILEIVLKCCE--CVTCVSVCFYDVRVLRSECEFVCYIVPVIFSACT 512
CR C + C +V C C +C VC Y RV C VCY V +C
Sbjct: 209 CRVACCSCRVV-CYSCRVVCYSCRVACCSCRVVC-YSCRVACCSCRVVCYSCRVACCSCR 266
Query: 513 HECVISLLYAVIWYKSLXCC 572
S V + CC
Sbjct: 267 VHMKCSSCRVVCSSCRVACC 286
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 35.9 bits (79), Expect = 0.035
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Frame = -3
Query: 613 KSVCLKIIIFLHY*QHXNDL-----YHITA-----YNKLITHS*VHALNITGTI*HTNSH 464
+++ ++ ++F Y +H N + Y+IT + + T S H +IT TI T+ +
Sbjct: 127 QALVIRQLVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHY 185
Query: 463 SLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLR 290
++ NT +T + TH +H TIS HY +H E I S H +
Sbjct: 186 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHIT 243
Query: 289 T 287
T
Sbjct: 244 T 244
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 580 HY*QHXNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THS 407
HY L H + + T S H +IT TI T+ +++ NT +T + TH
Sbjct: 184 HYNITNTSLQH---HEHITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHH 239
Query: 406 QHFNTISNISHY 371
+H TIS HY
Sbjct: 240 EHITTISRTHHY 251
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 35.9 bits (79), Expect = 0.035
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Frame = -3
Query: 613 KSVCLKIIIFLHY*QHXNDL-----YHITA-----YNKLITHS*VHALNITGTI*HTNSH 464
+++ ++ ++F Y +H N + Y+IT + + T S H +IT TI T+ +
Sbjct: 60 QALVIRQLVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHY 118
Query: 463 SLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLR 290
++ NT +T + TH +H TIS HY +H E I S H +
Sbjct: 119 NITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHIT 176
Query: 289 T 287
T
Sbjct: 177 T 177
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 580 HY*QHXNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THS 407
HY L H + + T S H +IT TI T+ +++ NT +T + TH
Sbjct: 117 HYNITNTSLQH---HEHITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHH 172
Query: 406 QHFNTISNISHY 371
+H TIS HY
Sbjct: 173 EHITTISRTHHY 184
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 35.5 bits (78), Expect = 0.046
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = -3
Query: 550 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 380
H+T Y ++H+ H L++TG H H+L TR + +HTL HVT T +
Sbjct: 118 HVTRY---MSHATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTL-HVTRYTSHATCHTL 173
Query: 379 SHYRFLGRL--HGDRHS 335
H + R H RH+
Sbjct: 174 RHTLHVTRYTSHSTRHT 190
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 550 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 380
H+T Y ++H+ H L++TG H H+L TR + HTL HVT + T +
Sbjct: 90 HVTRY---MSHATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTL 145
Query: 379 SHYRFLGRLHGDRHS 335
R++ H RH+
Sbjct: 146 HVTRYMS--HATRHT 158
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 550 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 410
H+T Y T H L++TG H H+L TR H H H
Sbjct: 34 HVTRYMSQAT---CHTLHVTGNTSHATCHTLHVTRYM-SHATRHTLH 76
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 550 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQH 401
H+T Y ++H+ H L++T H H+LR+T ++T H+ H
Sbjct: 146 HVTRY---MSHATRHTLHVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLH 192
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 550 HITAYNKLIT-HS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNT 392
H+T Y T H+ H L++T H+ H+L TR H H+ H + +
Sbjct: 160 HVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLHVTRYM-SHASRHMLHVTRYTS 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 550 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 410
H+T Y +HS H L++T + H + H L TR + H H H
Sbjct: 178 HVTRYT---SHSTRHTLHVTRYMSHASRHMLHVTRYT-SHATRHTLH 220
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 35.1 bits (77), Expect = 0.061
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -3
Query: 568 HXNDLYHITAYNKLI--THS*VHALNITGTI*HTNSH--SLRNTRTS*KHTLTHVTHS 407
H + H ++ + + THS HAL T T+ HT+SH SL TRT TL H THS
Sbjct: 246 HTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIH-THS 302
Score = 32.7 bits (71), Expect = 0.33
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -3
Query: 583 LHY*QHXNDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV-THS 407
+H H + L T + THS HAL+ T TI HT+SHS + S TL H +HS
Sbjct: 346 IHTHSHSHAL-SFTPRTVIHTHSHPHALSFTRTIIHTHSHS--HHALSFTCTLIHTHSHS 402
Query: 406 QHFNTISNISH 374
+ S + H
Sbjct: 403 LALSFTSTLIH 413
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 583 LHY*QHXNDLYHITAYNKLITHS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTH 419
+H H + L + + + THS HAL+ T T+ HT+SHS L T + HT +H
Sbjct: 314 IHTHSHPHSL--LFTFTIIRTHSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSH 368
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -3
Query: 550 HITAYNKLI--THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTHVTHSQHF 398
H ++ + I THS H L+ T T+ HT+SHS L TRT HT +H HS F
Sbjct: 236 HALSFTRTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTL-IHTHSH-PHSLLF 288
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 188 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 45
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 149 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYILKAS 27
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -3
Query: 550 HITAYNKLITHS*VHALNITGTI*HTNSHSLRNTR--TS*KHTLT----HVT-HSQH 401
H+T Y + +TH H TG + H++R T T KH +T HVT H +H
Sbjct: 24 HVTRYTRHVTHYTRHVTRYTGHVTRYTRHAIRYTNHVTCYKHYITCYTRHVTNHKRH 80
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 282 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 413
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +3
Query: 201 CGVTCQR*--LGTSGCRQPSCQWRPSPDPGQVRSC--PRCPSLHTGIRSECRSPC 353
C VTC L T C + P P + R C P CP G SEC C
Sbjct: 222 CSVTCGEGIQLHTVVCSTGNQSQCKKPKPSEARKCQLPACPEWTVGKWSECSRTC 276
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +3
Query: 294 SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV---TCVSVCFYDVRVLRSE 464
SC RC LH G+ S C P + ++ I C CV +S+CF RVL
Sbjct: 337 SC-RCV-LHRGLMSMCF-----PSRANVDVFHIACSCL-CVLHRVLMSMCFD--RVLMPM 386
Query: 465 CEFVCYIVPVIFSACTHECV 524
C +C V V AC+ CV
Sbjct: 387 CSPLCVHVDVFPIACSCRCV 406
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 59 ERTCGRREALD*IEASNNLGQPSSHIHGHRTCTLEGQTARR 181
E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 690 ECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)
Length = 304
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 196 GSVELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKN 369
G V+ P+N D + + N +V+G P + ++R+ VH Y V ++++ L+N
Sbjct: 61 GPVQNPINHDTLRGEIRN-VVSGSPSKKISRWRREYRVHFYNEVGKIDSEKLKETLQN 117
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 478 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 368
HT ++S +TR + H TH TH +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = -3
Query: 556 LYHITAYNKLITHS*VHALNIT------GTI*H-TNSHSLRNTRTS*KHTLTHVTHSQHF 398
L H+T ITHS + L +T T+ H T +HS T TLTH T +
Sbjct: 62 LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Query: 397 NTISNISH 374
T SN++H
Sbjct: 122 LTHSNLTH 129
>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
Length = 964
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 122 PSSHIHGHRTCTLEGQTARRSIYP-WVLWSYLSTMTWYQRLSATILS 259
P SH +GH + ++EG T YP WV TW + L +T +S
Sbjct: 917 PGSHAYGHPSHSMEGSTE----YPSWVSAVGKEYPTWVEDLDSTSVS 959
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 511 VHALNI-TGTI*HTNSHSLRNTRTS*K-HTLTHVTHSQHFNTISNISH 374
VH+ NI +GT N ++L + S +TL+ + HS + NT+S I H
Sbjct: 308 VHSSNILSGTDHSDNGNNLSSMDHSDNDYTLSGIDHSDNGNTLSGIDH 355
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +1
Query: 391 LC*SVVSALHV*V-----CVFMMCACYEVSVSLCVI*CRLYLVRVLMSAL*VYCML*Y-- 549
LC V S HV V C M C++ LC ++ V V+MS + V C+ Y
Sbjct: 556 LCRYVASVQHVYVVMSPVCTMFMSLCHQCVPCLCRYVASVHHVYVVMSPV-VPCLCPYVA 614
Query: 550 GTNHXYVVNSV 582
+H YV+ S+
Sbjct: 615 SVHHVYVIMSL 625
>SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 749 QPRLPDTVDEMSTSPPHGSAYFRTKE 672
QP +PD VDE++TS + Y+ + E
Sbjct: 10 QPNIPDIVDEINTSSSKPAEYYYSDE 35
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 486 LYNTQTHTHFVTRAHHKNTH 427
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 454 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 341
+T S TL VTHS ++++ ++SH RF G H R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +3
Query: 249 PSCQWRPSPDPGQ---VRSCPRCPSL 317
P C+W P+PD G C CP L
Sbjct: 161 PDCRWCPAPDCGYAVIATGCASCPKL 186
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 457 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 332
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
Length = 196
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Frame = -2
Query: 281 RIRRGSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----R 138
++ GSP+TRW LP T + TG+ E + SQ G PQ YR G +
Sbjct: 95 KVTTGSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQ 154
Query: 137 GYATMAGR 114
GY + G+
Sbjct: 155 GYRSQGGK 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,845,958
Number of Sequences: 59808
Number of extensions: 620469
Number of successful extensions: 1853
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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