Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0708
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 35 0.054
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 35 0.071
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 32 0.50
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 32 0.50
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.50
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.50
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 28 6.2
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 8.1
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.054
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Frame = +3
Query: 201 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CE 380
C TCQ+ TS C P+ P + +C + + T +C C + ++ C
Sbjct: 105 CQSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCV 164
Query: 381 ILEIVLKC---C--ECV-TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECV 524
+ + +C C +CV C ++++ E VP +C +CV
Sbjct: 165 QTQPIQQCQPQCQQQCVQQCAPTTTAAPQIIKINMEISAQCVPQCQQSCQQQCV 218
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 34.7 bits (76), Expect = 0.071
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Frame = +3
Query: 201 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CE 380
C TCQ+ TS C P+ P + +C + + T +C C + ++ C
Sbjct: 105 CQSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVPQCQQQCQQQCV 164
Query: 381 ILEIVLKC---C--ECV-TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECV 524
+ + +C C +CV C ++++ E VP +C +CV
Sbjct: 165 QTQPIQQCQPQCQQQCVQQCAPTTTAAPQIIKINMEISAQCVPQCQQSCQQQCV 218
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 565 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 607
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 679 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 734
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 735 KISLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 318 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 470
H+G + C+ P +R CE +E + V+C+SV Y+ L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702
>Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical
protein C09G5.1 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 WVLWSYLSTMTWYQ-RLSATILSMETLAGSWPGSELSPMSITTYGY 328
+++W Y + WY R+S T+L M+ LA S+ + I +Y Y
Sbjct: 144 FLVWIYPNGTVWYDCRISLTVLCMQDLARYPLDSQNCGLRILSYAY 189
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 430 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 320
TL H T+S QHF+ ++ Y+F G L D +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQV 223
D ++ I +G +V+ D G + P+R+S K + D RW+++
Sbjct: 171 DVLIAQIIHGTVHVIFDFGSLT-----PSRISAGKALDDGRWHEM 210
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 174 RGDQFIPGFCGVTCQR*LGTSGCRQPSCQWRPSPDPGQV---RSCPRCPSLHTGIRSECR 344
+GDQ IPG C G G P C W+P V R P G +E R
Sbjct: 566 KGDQGIPGL-DAPCPT--GPDGLPLPYCSWKPMDGKNDVWERRKRASLPGAQPGKGAETR 622
Query: 345 SP 350
P
Sbjct: 623 PP 624
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +3
Query: 297 CPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVC-FYDVRVLRSECEF 473
C +C + G S C++ + E+L C + V VC + V L +C F
Sbjct: 3633 CHKCKKAYFGGESRCQAALDSSQFNPEELL---CGGCSDTSGVQVCPRHGVEYLEYKCRF 3689
Query: 474 VCYIVPVIFSACTHEC 521
C I TH C
Sbjct: 3690 CCSIAVYFCFGTTHFC 3705
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,182
Number of Sequences: 27780
Number of extensions: 443979
Number of successful extensions: 1195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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