Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0708
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 562  NDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLR 455
            N   H T  ++LI H+  H+  IT T   TNS +++
Sbjct: 1350 NTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMK 1385


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 116 GQPSSHIHGHRTCTLEGQTA 175
           GQ SSH HG ++ T E   A
Sbjct: 399 GQSSSHHHGSKSWTQEDMDA 418


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 304 RGQLRTWPGSGEG 266
           RGQLRT   SGEG
Sbjct: 396 RGQLRTKIESGEG 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,006
Number of Sequences: 438
Number of extensions: 5660
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)