Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0707
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   0.64 
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   1.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   6.0  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    24   7.9  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 203 TVNSNFSIRIYCAFY*KRLWAWVTF 129
           TVN      +Y +F+ +R+W W TF
Sbjct: 522 TVNRRDYTNVYNSFHDRRVWRWSTF 546


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 350 FFFFFSINYFLCNIKNTIQN*FKFRVCSQNMYLIIKK*FIEHFHHY*F*TVN--SNFSIR 177
           F    SIN     +K  + + F F +C+  MY +    F+EH + Y F   +   NFS+ 
Sbjct: 623 FLSLLSIN----QLKIVVGSLFMFTICNLLMYYLYGSPFLEHTYLYHFGRTDHRHNFSLH 678

Query: 176 IYCAFY 159
               +Y
Sbjct: 679 HLNLYY 684


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 350 FFFFFSINYFLCNIKNTIQN*FKFRVCSQNMYLII 246
           FFF+FS+  F   +  ++   F FR+C     L I
Sbjct: 110 FFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDI 144


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 155 FSKTHSIFLLRNLNLQFKISNG 220
           FS TH  F   N N +FK+ +G
Sbjct: 14  FSLTHKTFAFCNCNNRFKMMSG 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,478
Number of Sequences: 5004
Number of extensions: 22321
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)