Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0707
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    27   4.1  
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    26   7.2  

>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 110 VCTYLPIDNTATANNILDLLLRVEHQRKTQKF 15
           +C++L +D+ ATA +     L+V H+R  + +
Sbjct: 149 LCSFLLVDSLATAESYQSCSLKVNHKRVAKAY 180


>11_04_0160 + 14247463-14247584,14247710-14247923,14250099-14250215,
            14251578-14251670,14251748-14251922,14252981-14253017,
            14253842-14253875,14254212-14254481,14255768-14255872,
            14256295-14256392,14256474-14256616,14257197-14257290,
            14257378-14257487,14258018-14258172,14258252-14258332,
            14258415-14258535,14259358-14259464,14259537-14259668,
            14261105-14261258,14264094-14264211,14264344-14264517,
            14264831-14264882,14265450-14265577,14265670-14265820,
            14265904-14266242
          Length = 1107

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 350  FFFFFSINYFLCNIKNTIQN*FKFRVCSQNMYLI 249
            F  F+ IN+F+ +I +       FR+C Q  Y +
Sbjct: 959  FIAFYIINFFISSIPSAGMYTIMFRLCRQPTYWV 992


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,843,827
Number of Sequences: 37544
Number of extensions: 103473
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)