Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0707
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   2.4  
SB_14974| Best HMM Match : PA14 (HMM E-Value=0.73)                     27   3.2  
SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)                   27   3.2  

>SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 879

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 159 LKTIMGMGYLFVDLKISMYIFTYRQYSNSQQHIRFIAKS 43
           L+TIM + ++F+ L  S+Y F  R+  ++    RFI  S
Sbjct: 726 LRTIMFVYFIFLSLVSSVYAFKARRLPDNFNEARFIGFS 764


>SB_14974| Best HMM Match : PA14 (HMM E-Value=0.73)
          Length = 611

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 228 TFSPLLILNCKFKFLNKNILCVLLKTIMGM 139
           T S L +LN  FKF NK+ LC+  +  + M
Sbjct: 342 TKSKLRVLNYFFKFKNKSTLCIPARLALRM 371


>SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)
          Length = 598

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 228 TFSPLLILNCKFKFLNKNILCVLLKTIMGM 139
           T S L +LN  FKF NK+ LC+  +  + M
Sbjct: 306 TKSKLRVLNYFFKFKNKSTLCIPARLALRM 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,538,847
Number of Sequences: 59808
Number of extensions: 134379
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)