Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0707
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    27   3.8  
AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta p...    26   6.6  
AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha ...    26   6.6  

>Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 140 MPIIVFSKTHSIFLLRNLNLQFK 208
           M I + S T S+  LRNLN+Q K
Sbjct: 188 MAISILSNTTSVIFLRNLNIQRK 210


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 95  VNMYILIFKSTKR*PMPIIVFSKTHSIFLLRNLNLQFKISNGENVQ*ITSLLSN 256
           + +Y  +F+S K   +   +     ++F + ++N  FKI N +NV  + SL  N
Sbjct: 496 IRLYKGLFESNKFSIVGFDIRQDIEAMFTVPSINKNFKIENIQNVICVKSLAEN 549


>AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 140 MPIIVFSKTHSIFLLRNLNLQFK 208
           M I + S T S+  LRNLN+Q K
Sbjct: 188 MAISILSNTTSVIFLRNLNIQRK 210


>Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical
           protein F11C1.6b protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 188 NLNLQFKISNGENVQ-*ITSLLSNTCFVST 274
           NL  Q+K+SNG+ V   + +LL N  FVS+
Sbjct: 325 NLLSQYKMSNGDEVPVGLVALLGNQTFVSS 354


>Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical
           protein F11C1.6a protein.
          Length = 572

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 188 NLNLQFKISNGENVQ-*ITSLLSNTCFVST 274
           NL  Q+K+SNG+ V   + +LL N  FVS+
Sbjct: 405 NLLSQYKMSNGDEVPVGLVALLGNQTFVSS 434


>AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 188 NLNLQFKISNGENVQ-*ITSLLSNTCFVST 274
           NL  Q+K+SNG+ V   + +LL N  FVS+
Sbjct: 325 NLLSQYKMSNGDEVPVGLVALLGNQTFVSS 354


>AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha
           protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 188 NLNLQFKISNGENVQ-*ITSLLSNTCFVST 274
           NL  Q+K+SNG+ V   + +LL N  FVS+
Sbjct: 401 NLLSQYKMSNGDEVPVGLVALLGNQTFVSS 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,832,788
Number of Sequences: 27780
Number of extensions: 121530
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)