Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0706
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 481 LHNLWRPRILFCNWIS*TF 537
           LHN+WRP   F N    TF
Sbjct: 84  LHNIWRPDCFFKNAKKVTF 102


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   LSFCRIFAFKLNF 47
           ++FCR+F F L F
Sbjct: 209 MTFCRVFPFHLMF 221


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   LSFCRIFAFKLNF 47
           ++FCR+F F L F
Sbjct: 209 MTFCRVFPFHLMF 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,269
Number of Sequences: 438
Number of extensions: 1526
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)