Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0705
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.057
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.71
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.2
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 3.8
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 5.0
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 5.0
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 26 5.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.6
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 25 8.7
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.057
Identities = 31/120 (25%), Positives = 47/120 (39%)
Frame = +2
Query: 218 SQMKTPTKNTVISLLTSTAATERSYKNLNHRRAALVKTDTLNILTHRPAINSTTALMVFP 397
S T +T ++ + ST T S L+ +A T T T ++NSTTA
Sbjct: 297 STTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASS 356
Query: 398 TSFRVLQDCTLTKRPPTATGKK*STGNATKSQKMFWMMVSPVPTARSWAPTAVSLPHPTF 577
T + T T T ST + S +P+ +A S T+VS P++
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSATSASS-------TPLTSANSTTSTSVSSTAPSY 409
Score = 25.4 bits (53), Expect = 8.7
Identities = 26/117 (22%), Positives = 47/117 (40%)
Frame = +2
Query: 212 SCSQMKTPTKNTVISLLTSTAATERSYKNLNHRRAALVKTDTLNILTHRPAINSTTALMV 391
S + + +T S L S++ T S + + ++L + T + + NSTT+
Sbjct: 113 SATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTS--A 170
Query: 392 FPTSFRVLQDCTLTKRPPTATGKK*STGNATKSQKMFWMMVSPVPTARSWAPTAVSL 562
PTS + T +AT ++ + + S TA S + T+ SL
Sbjct: 171 TPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSL 227
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.71
Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 1/117 (0%)
Frame = -2
Query: 527 SGQVKPSSKTSFVIWSHCLLTTSFQSQLEVSSSKYSPGGHGSSLGIPSAQ*WNLS-QACG 351
S PSS +S + S L T+S S SSS S SS S+ + S +
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276
Query: 350 SGCLKYPF*RGQPFDGLGSCSSFLSPQSTLEGISQCSLLGFSSENTRPSGHSFSSAS 180
S P S SS SP ST IS S S +T S SS+S
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSS--SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331
Score = 29.1 bits (62), Expect = 0.71
Identities = 38/123 (30%), Positives = 52/123 (42%)
Frame = -2
Query: 536 TSPSGQVKPSSKTSFVIWSHCLLTTSFQSQLEVSSSKYSPGGHGSSLGIPSAQ*WNLSQA 357
+S S P+S TS I S ++SF S L SSS S SS P++ +S +
Sbjct: 292 SSSSSSSSPTS-TSSTISSSSSSSSSFSSTLS-SSSMSSSSSFSSS---PTSSSSTISSS 346
Query: 356 CGSGCLKYPF*RGQPFDGLGSCSSFLSPQSTLEGISQCSLLGFSSENTRPSGHSFSSASP 177
S F S SSF S S+ S +L SS ++RP+ S S+S
Sbjct: 347 SSSPSSS-SF--SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSL 403
Query: 176 LLH 168
H
Sbjct: 404 SSH 406
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 1.2
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +2
Query: 212 SCSQMKTPTKNTVISLLTSTAATERS--YKNLNHRRAALVKTDTLNILTHRP-AINSTTA 382
S S T T ++I +S T S Y + ++++ + +L+ + P +I ++T+
Sbjct: 195 STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTS 254
Query: 383 LMVFPTSFRVLQDCTLTKRPPTATGKK*STGNATKSQKMFWMMVSPVPTARSWAPTAVS 559
V +S + T TG +TG+AT S F+ S +PT+ P++VS
Sbjct: 255 TPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTS---VPSSVS 310
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 441 GLFVKVQSWRT--RKLVGNTISAVVEFIAGLWVRMFKVSV 328
G +RT + +GN I AV ++ G W +F V +
Sbjct: 377 GFSTGTNEYRTLMKNAIGNLIIAVAGYVPGYWFNVFLVEI 416
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 408 RKLVGNTISAVVEFIAGLWVRMFKVSV 328
+ +GN I AV ++ G W +F V +
Sbjct: 391 KNAIGNLIIAVAGYVPGYWFNVFLVEI 417
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 311 FDGLGSCSSFLSPQSTLEGISQCSLLGFSSENTRPSGHSFSSASP 177
FDG + S+ SP+S+ + QCSL F + + + S +P
Sbjct: 391 FDGGKTWSTVASPESSCNSMKQCSLHLFLDPHVSHASIASSKFAP 435
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 551 PLGPMTSPSGQVKPSSKTSFVIWSHCLLTTSFQSQLEVSSSKYSP 417
PL ++ + KP +T+ I S LL++ VS+++Y P
Sbjct: 106 PLFSWSTVNNPTKPVDETNATIPSSLLLSSGISPNATVSNAQYGP 150
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 533 SPSGQVKPSSKTSFVIWSHCLLTTSFQSQLEVSSSKYSPGG 411
SPS QV P SK +I+ + ++S +S E + P G
Sbjct: 276 SPSSQVPPVSKKHVIIYENKEGSSSSESVYEDVFEDFDPSG 316
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = +1
Query: 283 KELQEP---KPSKGCPRQNGYFKHPDPQACDKF 372
K +Q P +P+ QN YF P P A D F
Sbjct: 1005 KSVQAPIPAQPTGNITIQNAYFTAPQPMAADPF 1037
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 408 RKLVGNTISAVVEFIAGLWVRMFKVSV 328
+ +GN I AV +I G WV + + V
Sbjct: 400 KNAIGNLIIAVAGYIPGYWVSVVLIEV 426
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 536 TSPSGQVKPSSKTSFVIWSHCLLTTSFQSQLEVSSSKYS 420
+SP Q + KT ++W LL TS+ S + ++S +S
Sbjct: 64 SSPPPQTQSFLKTVLIVW-FSLLVTSYFSYMPFAASYFS 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.139 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,262
Number of Sequences: 5004
Number of extensions: 66250
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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