Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0705
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 36 0.034
04_01_0377 - 4970034-4970687 33 0.18
12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447... 31 0.98
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 31 0.98
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010... 31 1.3
01_07_0032 - 40608330-40609474,40611524-40611647 31 1.3
12_02_1174 - 26696869-26698191 30 1.7
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 30 1.7
01_01_1192 + 9511961-9512977,9513860-9514078 30 1.7
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 29 3.9
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 29 3.9
10_01_0056 + 795258-796211 29 5.2
05_01_0545 - 4756266-4757510 29 5.2
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205... 29 5.2
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 28 6.9
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 28 6.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.9
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 28 9.1
04_03_0468 + 16249716-16249822,16250080-16250233,16250788-16251138 28 9.1
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 28 9.1
01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041 28 9.1
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 35.9 bits (79), Expect = 0.034
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 226 ENPNKEHCDIPSNVDC--GDRKELQEPKPSKGCPRQNGYFKHPDPQA 360
E P +E C IP+ + C RK + + +G P +NGYF+ PD +A
Sbjct: 34 ETPKREECRIPATLPCPAAPRKAVPDFGKRRG-PPKNGYFQPPDLEA 79
>04_01_0377 - 4970034-4970687
Length = 217
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/89 (30%), Positives = 39/89 (43%)
Frame = +1
Query: 124 SGFYPDPYQCDLYYKCSRGDAEEKLCPDGLVFSDENPNKEHCDIPSNVDCGDRKELQEPK 303
SG P + D+ KC R +A +LCP+ + S +C + S CG+ +
Sbjct: 94 SGCQNGPCRADI--KCGR-NANGELCPNNMCCSQWG----YCGLGSEF-CGNGCQSGACC 145
Query: 304 PSKGCPRQNGYFKHPDPQACDKFHYCADG 390
P K C +Q G K P+ C YC G
Sbjct: 146 PEKRCGKQAGGDKCPNNFCCSAGGYCGLG 174
>12_02_0067 +
13144002-13144203,13144471-13144529,13144638-13144713,
13144802-13144873,13144969-13145056,13145365-13145601,
13145705-13145910,13145946-13146122,13146220-13146251,
13146330-13146432,13146547-13146815,13148029-13148175,
13148272-13148412,13148509-13148595,13148841-13148931,
13149093-13149192,13149292-13149352,13149442-13149663,
13149756-13149872,13149972-13150061,13150168-13150344
Length = 917
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 254 SLLTSTAATERSYKNLNHRRAALVKTDTLNILTHRPAINSTTALMVFPTSFRVLQDCTLT 433
+LL S AA R+Y++ RR L L ++H P T L + P S + D + T
Sbjct: 230 NLLLSHAAAVRTYRDKLFRRGRLASFSILYGMSHSPTKKRITQLHIEPGSLPLAGDTSYT 289
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 539 MTSPSGQVKPSSKTSFVIWSHCLLTTSFQSQLEVSSSKYSP--GGHGSSLGIPSAQ 378
+ PS Q+KP TS V+ S +TTSF L S S S+LGIP +Q
Sbjct: 254 LKDPS-QIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDSNLGIPYSQ 308
>04_03_0793 +
19699355-19699472,19700245-19700633,19700824-19701065,
19701150-19701663
Length = 420
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PDP-QACDKFHYCADGIPNELPCPPGLYFDEETSNCDW 456
P P Q D FH +G+ +LP P G+Y +W
Sbjct: 372 PQPAQPRDAFHQILNGLARKLPHPEGVYLQPSDKRLNW 409
>01_07_0032 - 40608330-40609474,40611524-40611647
Length = 422
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 343 HPDPQACDKFHYCADGIPNELPCPPGLYFDEETSNCDWKE 462
H + D FH +G+ +LP P G++ + DW +
Sbjct: 374 HQPARPGDAFHQILNGLARKLPHPKGVFLEPGEKGIDWDQ 413
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 PVPTARSWAPTAVSLPHPTFPHP 586
P P W+PTAV+ P PT P P
Sbjct: 274 PPPPEDYWSPTAVTPPEPTKPKP 296
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 340 KHPDPQACDKFHYCADGIPNELPCPPGLYFDEETSNCDWKEVVNR 474
K+PD D+ YC G P L P +F E S CD ++++
Sbjct: 67 KNPDSLPFDEILYCNIGNPQSLGQQPVTFFREVLSLCDHPALLDK 111
>01_01_1192 + 9511961-9512977,9513860-9514078
Length = 411
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 681 ERILIVDLPGMDSFPFAVGLRYGRYRTSGQSSGWG--KVGWGKETAVGAHDLAVG 523
ER+ + ++PGMD+FP V + YR++G G VG G A+DLA G
Sbjct: 154 ERV-VPEVPGMDTFPGKV-VHSADYRSAGAFKGRSVLVVGCGNSGFEIAYDLAAG 206
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 349 DPQACDKFHYCADGIPNELPCPPGLYFDEETSN 447
D + C +C G+ +PCP G Y E T N
Sbjct: 174 DCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLN 206
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 130 FYPDPYQCDLYYKCSRGDAEEKLCPDGLVFSDENPNKEHCDIPSNVDCGDRKELQEPK 303
++PD + + GLVF D++ N + ++ D DR E+ E K
Sbjct: 154 YFPDQSLDNAFVPADASPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERK 211
>10_01_0056 + 795258-796211
Length = 317
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 112 CPDKSGFYPDPYQCDLYYKCSRGDAEEKLC 201
CPD+ G PY + CSRGD + C
Sbjct: 27 CPDRCGDVDIPYPFGIGPNCSRGDGFDIAC 56
>05_01_0545 - 4756266-4757510
Length = 414
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 274 GDRKELQEPKPSKGCPRQNGYFKHPDPQACDKFHYCADGIPNEL--PCPPGLY 426
GDR+ +P + PRQ F P C F C +P+ L P PP Y
Sbjct: 341 GDRRNCLPNRPYQRTPRQCAAFYAAPPVDCAAFQ-CKPFVPSPLLPPPPPPAY 392
>01_07_0033 -
40619145-40619658,40619761-40620002,40620178-40620566,
40621586-40621688
Length = 415
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 346 PDP-QACDKFHYCADGIPNELPCPPGLYFDEETSNCDWKE 462
P P Q D FH +G+ +LP P +Y D +W +
Sbjct: 367 PQPAQPGDAFHQILNGLGRKLPHPKSVYLDPGQKVLNWTQ 406
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 524 PTARSWAPTAVSLPHPTFPHPEDCPEVLYLP*RSPTAKGKLSIP 655
P W P + LP P PHP P + P +P +G+ S P
Sbjct: 14 PGEAEWPPE-LRLPPPPPPHPPPPPPLEPAPPSTPQLRGEASPP 56
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 219 EHETIRTQLLFCISSAAFVIKVTLIRVRVEAALV 118
EH IR + F ++AAFV+ + +I + ++ LV
Sbjct: 245 EHHAIRLKAFFVFNAAAFVMSLLIIMLLLDKQLV 278
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Frame = -1
Query: 684 HERILIVD-----LPGMDSFPFAVGLRYGRYRTSGQSSGWGK-VG---WGKETAVGAHDL 532
H + +I+D L G++ VG R + + S+ +G +G W GAH
Sbjct: 228 HSKWMILDRVRFTLDGLECDKIGVGYEAYRNQPNFCSAPYGSCLGNQLWNFWENAGAHTF 287
Query: 531 AVGTGETIIQNIFCDLVALPVDYFF 457
+VG E + N+ +L+A ++Y +
Sbjct: 288 SVGVTEDLNTNLLIELMADDIEYVY 312
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 349 DPQACDKFHYCADGIPNELPCPPGLY 426
D QAC +C G+ +PCP G Y
Sbjct: 195 DCQACCPGFFCPHGLTCMIPCPLGAY 220
>04_03_0468 + 16249716-16249822,16250080-16250233,16250788-16251138
Length = 203
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 612 RYRTSGQSSGWGKVGWGKETAVGAHD 535
R R SG+ GWGK G AVG +
Sbjct: 53 RGRRSGRQGGWGKAGAAAIKAVGVEE 78
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +1
Query: 214 VFSDENPNKEHCDIPSNVDCGD--RKELQEPKPSKGCPRQNGYFKHPDPQACDKFHYCAD 387
VF DE I +++ D RK+ PS +Q F P Q D FH +
Sbjct: 344 VFVDEEDVPRLDSILTSIPIDDILRKQRLLANPSM---KQAMLFPQP-AQPRDAFHQILN 399
Query: 388 GIPNELPCPPGLYFDEETSNCDW 456
G+ +LP P +Y + +W
Sbjct: 400 GLARKLPHPDSVYLKPGEKHLNW 422
>01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041
Length = 609
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 548 LGPMTSPSGQVKPSSKTSFVIWSHCLLTTSFQSQLE 441
LGP TS + K F WSH + + S QSQLE
Sbjct: 553 LGPNTSNRSLSEGHCKVLF--WSHSMTSDSVQSQLE 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.139 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,867,447
Number of Sequences: 37544
Number of extensions: 509121
Number of successful extensions: 1275
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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