Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0705
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    29   0.047
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    29   0.062
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    28   0.081
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.76 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 403 LPCPPGLYFDEETSNCDWKEVVNRQCDQITKDVLDDGFTCPD 528
           LPC PG+   ++   C W   V  QC++   + + D +TC D
Sbjct: 451 LPCEPGMIKKQQGDTCCW---VCDQCEEY--EYVHDEYTCMD 487


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 0.062
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -2

Query: 542 PMTSPSGQVKPSSKTSFV-IWSHCLLTTSFQSQLEVS------SSKYSPGGHGSSLGIPS 384
           P TS +  V+P SK ++  +W  C+  +S + + E S      + +YSP    S++ IP 
Sbjct: 84  PKTSSNASVEPDSKVTYSGLWRVCVAISS-RMEYECSRIDYFPNEEYSPDPSDSTMAIPY 142

Query: 383 A 381
           A
Sbjct: 143 A 143


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 28.3 bits (60), Expect = 0.081
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 403 LPCPPGLYFDEETSNCDWKEVVNRQCDQITKDVLDDGFTCPD 528
           LPC PG+   ++   C W   V  QC++   + + D +TC D
Sbjct: 541 LPCEPGMIKKQQGDTCCW---VCDQCEEY--EYVYDEYTCMD 577


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 211 LVFSDENPNKEHCDIPSNVDCGDRKELQEPK 303
           ++FS    NKE CD   N++ G+   +  P+
Sbjct: 30  IMFSMTQVNKEECDYYQNLNLGEIYYIYNPR 60


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 578 PHPEDCPEVLY 610
           P P DCPE +Y
Sbjct: 858 PAPMDCPEAIY 868


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 220 SDENPNKEHCDIPSNVDCGDRKELQEPKPSKGCPRQN 330
           +D+   K  C++P + D      L  P    G PR N
Sbjct: 112 ADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRIN 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.139    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,662
Number of Sequences: 438
Number of extensions: 5185
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)