Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0705
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11720.1 68417.m01870 hypothetical protein 30 1.9
At4g15060.1 68417.m02314 F-box protein-related contains weak sim... 29 3.3
At1g61105.1 68414.m06884 disease resistance protein-related cont... 29 3.3
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 28 5.8
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 5.8
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 5.8
At3g12460.1 68416.m01551 hypothetical protein 28 5.8
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 7.6
At4g01640.1 68417.m00213 hypothetical protein 28 7.6
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 28 7.6
>At4g11720.1 68417.m01870 hypothetical protein
Length = 658
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = -1
Query: 705 NFFGIVAHERILIVDLPGMDSFPFAVGLRYGRYRTSGQSSG-WGKVG---WGKETAVGAH 538
+F+ ++ ER+ L G++ VG + + SS W + W G H
Sbjct: 265 DFYLVIPRERVRFT-LDGLECNKIGVGYEAFNTQPNFCSSPYWSCLHNQLWNFRENAGPH 323
Query: 537 DLAVGTGETIIQNIFCDLVALPVDYFFPVAVG 442
++G ET+ N+ +L A ++Y F + G
Sbjct: 324 SFSIGVTETLNTNLMIELRADDIEYVFQRSPG 355
>At4g15060.1 68417.m02314 F-box protein-related contains weak
similarity to F-box domain Pfam:PF00646
Length = 572
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 169 CSRGDAEEKLCPDGLVFSDENPNKEHCDIPSN 264
C R +AEE L PDG+VF ++ N + C SN
Sbjct: 32 CIRVNAEEALYPDGIVF-NQLENLKLCPCDSN 62
>At1g61105.1 68414.m06884 disease resistance protein-related
contains weak hit to InterPro:IPR000157 TIR domain
Length = 188
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 418 GLYFDEETSNCDWKEVVNRQCDQITKDVLD 507
GL FD TSN DW E + D +TK++L+
Sbjct: 154 GLTFD--TSNGDWSEFLAMASDAVTKNLLE 181
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 525 GTGETIIQNIFCDLVALPVDYFFPVAVGGLFVKVQSWRTRKLVGNTISAVVEFIAGL 355
G+G+T++ + ++AL + P+A G + + +R+L T V +F+A L
Sbjct: 144 GSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASL 200
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 518 PVPTARSWAPTAVSLPHPTFPHPEDCP 598
P PT + P P+P P PE CP
Sbjct: 156 PTPTPEAPCPPPPPTPYPPPPKPETCP 182
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 518 PVPTARSWAPTAVSLPHPTFPHPEDCPEVLYLP*RSPTAKGKLSIPGRSTMRIRSCATI 694
P P+ S + S+P P+ P P P +P R+P + G I +R+ CA +
Sbjct: 60 PTPSVPSPSVPTPSVPSPSVPSPNPTP---VIPPRTPGSSGNCPI---DALRLGVCANV 112
>At3g12460.1 68416.m01551 hypothetical protein
Length = 242
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 370 FHYCADGIPNELPCPPGLYFDEETSNCDWKEVVNRQCDQITKDVLD 507
++Y + I E PG+ D E S DW+ V N DQI + +D
Sbjct: 179 YNYSLEKIVEENLGYPGVRLDREVSMSDWR-VYNLSYDQILQASID 223
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 515 SPVPTARSWAPTAVSLPHPTFP 580
SP +SW+ TA+S P P+ P
Sbjct: 58 SPTIPCQSWSATAISTPSPSLP 79
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 515 SPVPTARSWAPTAVSLPHPTFP 580
SP +SW+ TA+S P P+ P
Sbjct: 58 SPTIPCQSWSATAISTPSPSLP 79
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 515 SPVPTARSWAPTAVSLPHPTFPHPEDCPEV 604
SPV + +S AP + S P PT P PE P V
Sbjct: 65 SPVESPKSPAPVSESSPPPT-PVPESSPPV 93
>At4g01640.1 68417.m00213 hypothetical protein
Length = 300
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 642 FPFAVGLRYGRYRTSGQSSGWGKVGWGKETAVGAH 538
FP + R RY S W K+G+GK+ G +
Sbjct: 48 FPLSTFQRLDRYEHQVGSVSWAKLGFGKDKINGTY 82
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
weakly similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 391
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 642 FPFAVGLRYGRYRTSGQSSGWGKVGWGKETAVGAH 538
FP + R RY S W K+G+GK+ G +
Sbjct: 130 FPLSTFQRLDRYEHQVGSVSWAKLGFGKDKINGTY 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.139 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,867
Number of Sequences: 28952
Number of extensions: 389266
Number of successful extensions: 926
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -