Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0702
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    38   0.002
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    36   0.008
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    34   0.019
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.9  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   6.6  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.7  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   8.7  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A++L+
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELD 463



 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 501 EAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
           E I     AI+L+P  A  + ++ Q    L   N CI  C  A +++
Sbjct: 451 ECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 486 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+L+L+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 480 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALKLNCD 647
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +    + D   + ++  D
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPD 91


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 646 SQFNFKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSENA 476
           SQF  K   +  IH + L    Y+      N  LC F  +  +   + SS F  ++A
Sbjct: 717 SQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQDA 773


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 100 LIFLCRFR*FVRKKIIAERQQF 35
           +IF C  R F RKK +AE+Q+F
Sbjct: 114 IIFYC-LRHFKRKKFLAEQQEF 134


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 132 LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 257
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 522 AAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALK 635
           +A  L+ QS +L A  G   +    PNAC+ +  H+ K
Sbjct: 63  SAEPLSRQSTILDADEGNQDVSDTTPNACLNEGRHSPK 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,890
Number of Sequences: 5004
Number of extensions: 51362
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)