Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0702
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 78   9e-15
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   2e-05
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)                 36   0.046
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)                 32   0.43 
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        32   0.43 
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   32   0.57 
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)                 31   1.00 
SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20)                 30   1.7  
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 29   4.0  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
 Frame = +3

Query: 351 LDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ----KYDEAINLY 518
           +D  GVI PD  DE   MGD +                               +EAI L+
Sbjct: 13  IDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTLGNLEEAIKLF 71

Query: 519 TAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLNCDSXXXXXXXXXXXXLLGK 698
           T AI  NP SA LFAKR   ++++ KPNA I+DC  A ++N DS             LG 
Sbjct: 72  TDAIMKNPHSAPLFAKRASCFIRMKKPNAAIRDCDKAAQINPDSAQIYKWRGRAHEFLGH 131

Query: 699 FEXSSHDLCESLKIDXD 749
           +E +  DL ++LK+D D
Sbjct: 132 WEKADKDLAQALKLDFD 148


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +3

Query: 477  AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKL 638
            A   +++ EA++ YT  I+L      LF+ R   +LKLNKP   + DC   LKL
Sbjct: 874  AVKREEFQEALDWYTKGIELTKTDHRLFSNRALCHLKLNKPKEALADCESCLKL 927


>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 23/80 (28%), Positives = 31/80 (38%)
 Frame = +3

Query: 480 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLNCDSXXX 659
           F E  Y+ AI  YT AI+L       +  R   YLK       + D   A++L+      
Sbjct: 198 FKEGNYNSAITFYTQAIELKADVPAYYGNRSFCYLKTEYYGLALADANKAIQLDRKYIKG 257

Query: 660 XXXXXXXXXLLGKFEXSSHD 719
                     LGKF+ S  D
Sbjct: 258 YYRRATANMALGKFKLSLKD 277


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 477 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLNCD 647
           A S     +AI  YT AI L+P + + ++ R   + KL+K N  ++D    +++  D
Sbjct: 19  ALSAGDTQKAIEFYTEAILLDPANHVFYSNRSAAFAKLSKYNEALEDARKCVEIKPD 75



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 477 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKL 638
           A+ ++ +D A   +  A +LNP +   +      + +      CIK+C  A+++
Sbjct: 240 AYKKKDFDTAHKHFNNAKELNPDNMTFYTNNAAAFFEEGNYEECIKECLEAVEV 293


>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
          Length = 1021

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 504 AINLYTAAIQLNPQSAL-LFAKRGQVYLKLNKPNACIKDCTHALKLNCDSXXXXXXXXXX 680
           A++ +T AI L+P+ A   + +RG+ Y KL KP   ++D T  L +              
Sbjct: 627 AVSYFTLAIILSPKQAWEAYHQRGKRYFKLKKPRHALQDFTAVLSMRPKHIEALCGRAVI 686

Query: 681 XXLLGKFEXSSHDLCESLKID 743
                K++ +  D   +LKI+
Sbjct: 687 NLTACKYQEAVGDFLAALKIN 707


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 477 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNK 596
           AF +QKY+EA+ LYT A+  +  +   +  R Q+  K  K
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQLDKKCIK 169


>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
          Length = 452

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 489 QKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
           ++Y  AI+LY  +I  +P +   + +R   ++ LNK    + D    +KLN
Sbjct: 298 KEYRTAIDLYNKSILASPINYFSWCQRATAFISLNKYEESLLDFEECIKLN 348


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +3

Query: 477 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
           A S+  + +A+ LY+ AI+L+P + +L+  R    ++  +    ++D   A +LN
Sbjct: 32  ACSKGDFQKAVELYSEAIKLDPNNHVLYGNRSAACIRTWQLEQALEDGKKAAELN 86


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +3

Query: 471 MRAFSEQKYDEAINLYTAAIQL------NPQSAL--LFAKRGQVYLKLNKPNACIKDCTH 626
           MR +   +Y EA+  Y+ AI +      + +SAL  L   R     ++   + C+KDCT 
Sbjct: 423 MRLYKIGRYAEAVEKYSQAIDVLWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTS 482

Query: 627 ALKLNCDS 650
           +L L  DS
Sbjct: 483 SLNLIPDS 490


>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
          Length = 455

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
 Frame = +3

Query: 480 FSEQKYDEAINLYTAAIQL----------NPQSALLFAKRGQVYLKLNKPNACIKDCTHA 629
           F    Y+ A++ Y AA++L            + A+++  R    LKL K  A IKD T A
Sbjct: 20  FKAGDYEAALSSYAAALKLYSGNEKDKEKQKEKAVIYKNRAACQLKLEKYEAAIKDATKA 79

Query: 630 LKL 638
           L +
Sbjct: 80  LDI 82


>SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20)
          Length = 1195

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 504  AINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
            A++ Y  AI++NP  A  F +RG   +KL+     + D   AL +N
Sbjct: 1097 ALDAYNEAIKVNPDYAEAFYQRGLTKMKLSHTKG-VHDFNRALAIN 1141



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 471 MRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLN 593
           M  F+ + +  A+N +T  ++ +PQ +  +  RG V+ K++
Sbjct: 107 MYRFNNENWTGAVNDFTEILEQDPQDSRAYTYRGTVFAKMD 147


>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/86 (22%), Positives = 35/86 (40%)
 Frame = +3

Query: 480 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLNCDSXXX 659
           F  ++ D + +  T AI+ NP  A  ++  G V+ +  +    + +  HA+KL  D    
Sbjct: 92  FQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVFKERGQLKDALANYRHAVKLKPDFIDG 151

Query: 660 XXXXXXXXXLLGKFEXSSHDLCESLK 737
                      G  E + H    +L+
Sbjct: 152 YINLAAALVAAGDLEGAVHAYATALQ 177


>SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 492 KYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHAL 632
           +YD+A++ + AA+   P+ ALL+ + G       +    +    HAL
Sbjct: 223 EYDKAVDCFQAAVIARPEDALLWNRLGATLANGGRSEEAVDAYRHAL 269


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 480  FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALKLN 641
            FS  KY EA++      ++ P+ AL++   G+VY KL + +    + + A+ L+
Sbjct: 1514 FSIDKYQEALHELEDLKKIVPREALVYFLIGKVYKKLGQAHLAQMNFSWAIDLD 1567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,151,458
Number of Sequences: 59808
Number of extensions: 375597
Number of successful extensions: 802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)