Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0701
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.015
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.027
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.047
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 31 0.14
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.25
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.25
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.33
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.58
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.3
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.8
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 3.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 3.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 4.1
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 7.2
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 7.2
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 25 7.2
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 25 7.2
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 25 9.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 9.5
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
++++GNL V +L+E G G +++C I+ + LS+ A IEY EA
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEA 119
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+ +GNL VTES L F G+I+S ++ K+ + R A +E+D P +A
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDA 59
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.3 bits (75), Expect = 0.015
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDK-LSRYMAKIEYD 634
+F+GNLD LV E L + F GQ+V + +D+ S+ + YD
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
++I NLD +TE + ++FG G+I S S++ + R + Y
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
+FI NLD + L + F G+I+SC + V +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE 203
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 389 ATEQTSDAQSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQI 568
A E + A+ S+ + + + + + + P +++G LD VTE+ L E+F G +
Sbjct: 47 AEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPV 106
Query: 569 VSCSI 583
S +
Sbjct: 107 ASIRV 111
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.7 bits (71), Expect = 0.047
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDD 598
+F+GNLD T++ L+E FG GQI ++ +D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFED 264
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHP 640
N++ + N+ VTE ++ + F +CG++ S I + AKI+++ P
Sbjct: 3 NQVIVTNISPEVTEKQISDFFSFCGKV---SNISTEKSGETQTAKIQFERP 50
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVS 574
+F+GNL TE L FG CG I S
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQS 394
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
K+FIG L+ T+ LR+ F G+++ C+++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRY---MAKIEYDHP 640
+++GN+D VT +L+ F CG + +I+ DK + + A IE+ P
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILC--DKFTGHPKGFAYIEFSEP 106
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.58
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQI 568
N +++GNL TE ++ +F CG+I
Sbjct: 32 NCVYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
N +F+GN+ V+E ++ E+F G + + +++
Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVL 40
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVK 592
+FIGNL E ++ E FG G+I I+ K
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK 333
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 479 PLLNK-IFIGNLDVLVTESKLREVFGYCGQI 568
P++NK ++I L + VT ++ EVF CG I
Sbjct: 106 PVINKAVYIQGLPLDVTVDEIEEVFKKCGVI 136
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDK--LSRYMAKIEY 631
+F+GNL E L FG CG I IV+D K L + A I++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSI-DYVRIVRDPKTNLGKGFAYIQF 318
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 292 ENSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERR 411
E+S N LPKS + A AP+ +++ ++ N RR
Sbjct: 548 ESSTVQTNKYLPKSSASPPANAPIVSSDVHKNENAGTARR 587
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 443 SLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVF-GYCGQIVSCSIIVKDDKLSRYMA 619
++N +L + +KI + NL VTE++++E+F G S+ + S+ +A
Sbjct: 40 AVNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIA 99
Query: 620 KIEYDHPXEA 649
I + P +A
Sbjct: 100 TIIFSRPGDA 109
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 446 LNFLESLNIKLPLLNKIFIGNLDVLVTESKLREV 547
L+ LE +++L + +IF NLDVL+ K +
Sbjct: 305 LSLLERKSVRLGIKERIFRQNLDVLLQLDKSERI 338
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSII-VKDDKLSRYMAKIEYD 634
I+IGNLD + E + VF G+ V +++ K+ S+ A ++Y+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 7.2
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 208 KTFHKFGH**SIQQEKEYEQKHL*TLETENSVKPENARLPKSGT-ASRAIAPV-AAANER 381
K+F FG+ S+Q + + L +S N L +S AS A + AAA
Sbjct: 420 KSFSSFGNV-SLQVPSSHRDTDVVLLSGRHSDSDGNGALKRSKIYASEITARMRAAATML 478
Query: 382 EHCNGANERRPKLET*NIRTQFEL 453
+ RRPK ET I+ L
Sbjct: 479 SQLDAEGSRRPKAETERIKNSIIL 502
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
+F+G L V+E +L+ +F G+IV I
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKI 334
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 53 DKCKSRTIPENIKFVLLFIEDNGD 124
+KCK R++ + LF +DN D
Sbjct: 91 EKCKGRSLSNATSYSTLFEDDNAD 114
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 633 SYSILAMYRDSLSSLTIIEQLTICPQ*PNTSRSFDSVTKTSRFPMKILFSNGSFMFKDSK 454
S+ I A+ R SSL+ + LTIC P + VT + S+ F+F++ +
Sbjct: 530 SFHISAVKRSPFSSLSPVILLTICNIAPFV-ENLSFVTCAKLMQLCSSLSSPRFLFRNPR 588
Query: 453 KFKLSPYV 430
L Y+
Sbjct: 589 NHLLLEYL 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,136
Number of Sequences: 5004
Number of extensions: 48541
Number of successful extensions: 158
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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