Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0701
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   44   1e-04
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 38   0.007
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 32   0.35 
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       32   0.35 
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 31   1.1  
SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)                  31   1.1  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       30   1.9  
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                       30   1.9  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)                 29   4.3  
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 462

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +2

Query: 479 PLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
           P  + +F+ NLD  V   KL++ F   G ++   I+  D+K S+ M  ++++ P EA
Sbjct: 182 PAASTVFVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQFETPMEA 238


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +2

Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
           L KIFIG L+   TE  L++ F   G IV C +I+K D  SR    + Y+
Sbjct: 49  LRKIFIGGLNWNTTEEGLKDYFSQWGTIVDC-VIMKRDGRSRGFGFVTYE 97


>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
           K+F+GN+   V   +L++ FGY G +V   II+
Sbjct: 80  KVFVGNIGFKVRARELKDFFGYFGDVVYAQIIM 112


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
           +FIGNL   + E  LRE+F  CG + S  +I
Sbjct: 58  VFIGNLPFDIEEEPLRELFTTCGNVESVRLI 88


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 458 ESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDK 601
           E L  K+    K+ + +LD   T  +LRE F  CG++    +++  +K
Sbjct: 226 EDLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGIDLLINSEK 273


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
           L  +F+GN+    +E +L+E+F   G ++S  ++
Sbjct: 24  LRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLV 57


>SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)
          Length = 901

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 283 LETENSVKPENARLPKSGTASRA-IAPVAAANEREHCNGANERR 411
           +ET N VK E     K+G  SR+  APV+ + E+  C+G   RR
Sbjct: 524 IETPNPVKTEAEEKDKTGKMSRSPSAPVSKSPEQGDCSGDIGRR 567


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 428 ETYG--LSLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
           + YG  + +N   + N  L +   +FIGNLD  V E  L + F   G I+    I++D
Sbjct: 78  KVYGKPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRD 135


>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
           ++I NLD  + + +LRE F   G I S  ++  D   S+    + +  P EA
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEA 265


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
           +F+ NLD  +T   L   F  CG I    +   D K +RY A IE+
Sbjct: 74  VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRY-AYIEF 118


>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 171 AKLHM*EFANLTRHEGSPLSSMKS-NTNFIFSGIVLDLHLSWIKL 40
           ++ H     N  R  G P S+++  NTNF+F  I   L +SW+ L
Sbjct: 507 SRRHQRAILNQHRSTGMPRSTLQQGNTNFLFIVITALLIVSWLLL 551


>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1148

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
           +FIG L   + E  + E+F  CG+I S  I
Sbjct: 353 VFIGGLPESINEHIINEIFYVCGEITSIRI 382


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRY 613
           NK++ GNL   +T+ +L+ VF      V+  +IVK+ +   Y
Sbjct: 50  NKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFY 91


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 521 VTESKLREVFGYCGQIVSCSIIVKDDKLSRYM--AKIEYDHPXEA 649
           +++  ++++FG  G + SC +I +D    + +  A + YD+P +A
Sbjct: 38  MSQEDIKKIFGTVGNVTSCKLI-RDRATGQSLGYAFVNYDNPDDA 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,230
Number of Sequences: 59808
Number of extensions: 332461
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)