Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0701
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 58 7e-09
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.025
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.025
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 36 0.025
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 36 0.025
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 36 0.025
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 36 0.025
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 36 0.025
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 34 0.076
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 34 0.076
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 34 0.076
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 34 0.10
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 31 0.71
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 31 0.71
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.2
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.2
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 1.2
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.2
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 30 1.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 1.6
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.6
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.2
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 29 2.2
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 29 2.2
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z74042-2|CAA98528.2| 379|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.9
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 2.9
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 29 3.8
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 29 3.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 5.0
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 5.0
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 5.0
AC024758-1|AAL32236.1| 109|Caenorhabditis elegans Hypothetical ... 28 5.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.6
U53343-2|AAQ81274.1| 196|Caenorhabditis elegans Hypothetical pr... 28 6.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.6
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 27 8.7
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 27 8.7
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +2
Query: 413 QSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVK 592
++ ++ +GL++ FL NI+ PL +IFI NL V KL EVFG G+I +
Sbjct: 163 RTGTYDLFGLNMEFLRQHNIEPPLCERIFIANLAFNVGTDKLYEVFGMAGKITWMDFRID 222
Query: 593 DDKLSRYMAKIEYDHPXEA 649
+ S+ + I+Y HP EA
Sbjct: 223 KEGKSKGVCVIQYTHPIEA 241
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+FIG L E LRE+F G I CS++ D SR A + +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+FIG L E LRE+F G I CS++ D SR A + +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+FIG L E LRE+F G I CS++ D SR A + +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+FIG L E LRE+F G I CS++ D SR A + +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+FIG L E LRE+F G I CS++ D SR A + +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYM 616
K+FIG L E LRE+F G I CS++ D SR M
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGM 184
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+FIG L E LRE+F G I CS++ D SR A + +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
IFI NLD ++ + + F G I+SC + + +D S+ + ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
IFI NLD ++ + + F G I+SC + + +D S+ + ++
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 105
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
IFI NLD ++ + + F G I+SC + + +D S+ + ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIV-KDDKLSRYMAKIEYD 634
+FIGN+D T ++ E F CGQIV +I K K + A IE+D
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFD 104
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +2
Query: 380 ANTATEQTSDAQSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYC 559
AN+ Q+ D + + +++ +++PL I+IG + V TE + +
Sbjct: 208 ANSKYNQSEDFPALDSNLLKVEKDYVNISRVEIPLGRNIYIGQVPVKDTEETFWKAV-FD 266
Query: 560 GQIVSCSIIVKDDKLSRYMAKIE 628
+IVS +IV D+ + + K E
Sbjct: 267 KRIVSIDVIVGDEPIEFFPKKAE 289
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
IFI NLD ++ + + F G I+SC + D+ S+ + ++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 193
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
IFI NLD ++ + + F G I+SC + D+ S+ + ++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 193
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIV-KDDKLSRYMAKIEYD 634
+FIGN+D T ++ E F CG IV +I K K + A IE+D
Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFD 110
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHP 640
NKIFIG L +TE +++E+ G + + S+ V S+ A EY P
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP 341
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHP 640
NKIFIG L +TE +++E+ G + + S+ V S+ A EY P
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP 341
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHP 640
NKIFIG L +TE +++E+ G + + S+ V S+ A EY P
Sbjct: 266 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP 316
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHP 640
NKIFIG L +TE +++E+ G + + S+ V S+ A EY P
Sbjct: 269 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP 319
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
++F+GNL V E++L+E+F G I C + K R + + EA
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEA 169
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
++F+GNL V E++L+E+F G I C + K R + + EA
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEA 169
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++GN+D T S++ E F CG++ + + DK + Y +
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKV--ARVTIPKDKFTGYQKNFAF 91
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+K+F+GNL V +KL++VF ++ C I+
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIV 35
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSC 577
++F+GNL V E++L+E+F G I C
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAEC 145
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+K+F+GNL V +KL++VF ++ C I+
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIV 35
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 506 NLDVLVTESKLREVFGYCGQIVSCSII 586
NL TE LR+VFG G+I C ++
Sbjct: 82 NLSSYTTEKDLRDVFGEFGEINKCDLV 108
>Z74042-2|CAA98528.2| 379|Caenorhabditis elegans Hypothetical
protein T11F9.3 protein.
Length = 379
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +2
Query: 14 KFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCLVKFAN---SYICNLALMEL 184
K W+A V++ + ++ T+PE F L E + + K + + C+ +EL
Sbjct: 256 KEWDASGVRNNYRKGIETNTMPEYTYFALTAPEGSTIEVRITKLSGFFCQHTCDYNGVEL 315
Query: 185 ENVEIDGKRL--FINLDTDNLFNKKRNMNRNIF 277
+ + D + + + D DNL+NK R+ N F
Sbjct: 316 K-YKTDRRIVSPLVCCDNDNLWNKTRSSTNNPF 347
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLS 607
+++GNLD VTE + +F G + +I + K++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEMKVN 85
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXE 646
+F+G ++ +ESKLR F G+I +++ + R A IEY E
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAE 156
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+F+GN+ V+E +R +F G ++S ++
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMV 50
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 479 PLLNKIFIGNLDVLVTESKLREVFG 553
P +++IF+G L V E +LR+VFG
Sbjct: 256 PSISRIFVGRLTDKVDEHQLRKVFG 280
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 525 VTKTSRFPMKILFSNGSFMFKDSKKF----KLSPYVSCFELWASLVCSV 391
VTK S+ K+L+ G +F D KF K S + F W + C++
Sbjct: 135 VTKLSKMDSKLLWDLGEVIFSDVSKFNSFDKDSMIANFFPKWIIMECAI 183
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 425 HETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQ 565
H G S F + K+ IG +D ++ RE+ GYC Q
Sbjct: 485 HNGCGKSTTFGMITGMHQATEGKVMIGGIDANANRAEARELIGYCPQ 531
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
L KIF+G L T+ +RE + G+I I+++D R
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDI-IVMRDPTTKR 62
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
L KIF+G L T+ +RE + G+I I+++D R
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDI-IVMRDPTTKR 62
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
L KIF+G L T+ +RE + G+I I+++D R
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDI-IVMRDPTTKR 62
>AC024758-1|AAL32236.1| 109|Caenorhabditis elegans Hypothetical
protein Y37E11AM.3 protein.
Length = 109
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 464 LNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCS 580
+ I+LP I ++ V E+ +REVFG CG IV S
Sbjct: 20 VRIELPDKRPFPIDQFELFVHEA-IREVFGSCGPIVKIS 57
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
IF+GNLD V E L + F G I+ I++D
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRD 135
>U53343-2|AAQ81274.1| 196|Caenorhabditis elegans Hypothetical
protein F22F4.5 protein.
Length = 196
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 161 CNLALMELENVEIDGKRLFINLDTDNLFNKKRNMNRNIF 277
C+L L + E V +D L L D +F +N N+F
Sbjct: 69 CDLVLHDCEKVSMDSAHLAEFLGEDTVFTLGKNKEGNVF 107
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
IF+GNLD V E L + F G I+ I++D
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRD 145
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 374 MNANTATE--QTSDAQSSKHETYGLSLNFLESLNIKLPLLNKIFIGN 508
M +N A E +T + K ET L L ++E L +LP +NK G+
Sbjct: 224 MFSNCAIEFSETMQEIAEKSETSLLCLEYIEMLKQQLPFVNKGIFGD 270
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+++GNLD VTE + +F G + +I
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+++GNLD VTE + +F G + +I
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,901,076
Number of Sequences: 27780
Number of extensions: 268004
Number of successful extensions: 813
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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